Factsheet for VIT_14s0108g00510.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	76.83	73.54
GSMUA_Achr4P00490_001	Banana	cytosol	76.02	73.05
GSMUA_Achr7P21000_001	Banana	cytosol	74.39	72.62
GSMUA_Achr6P10690_001	Banana	nucleus	73.58	70.98
VIT_17s0000g06030.t01	Wine grape	cytosol	76.02	69.78
PGSC0003DMT400017852	Potato	cytosol	71.95	69.41
Solyc02g067370.2.1	Tomato	nucleus	70.73	68.5
EES07035	Sorghum	cytosol	66.67	65.34
TraesCS6A01G202200.1	Wheat	nucleus	65.45	64.14
TraesCS6B01G227700.1	Wheat	nucleus	65.45	64.14
TraesCS6D01G185800.1	Wheat	golgi	65.45	64.14
HORVU6Hr1G051930.1	Barley	nucleus	65.85	64.03
Zm00001d050874_P001	Maize	extracellular	65.04	63.74
Zm00001d016935_P001	Maize	extracellular	66.26	63.18
Os02t0576700-01	Rice	extracellular	64.63	63.1
TraesCS2B01G342400.1	Wheat	cytosol	57.32	55.73
TraesCS2D01G323500.1	Wheat	cytosol	57.32	55.73
TraesCS2A01G344900.1	Wheat	cytosol	56.91	55.34
EES12291	Sorghum	cytosol	56.5	54.09
Os04t0459700-02	Rice	nucleus	56.91	54.05
VIT_09s0002g02330.t01	Wine grape	nucleus	28.46	18.37
VIT_11s0016g02050.t01	Wine grape	nucleus	28.05	17.88

Protein Annotations

EntrezGene:100249121	wikigene:100249121	MapMan:12.2.8	Gene3D:3.30.1120.90	ProteinID:CCB47540	ProteinID:CCB47540.1
ncoils:Coil	UniProt:F6H5R9	EMBL:FN595239	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	EntrezGene:LOC100249121
wikigene:LOC100249121	InterPro:NAP-like_sf	InterPro:NAP_family	PFAM:PF00956	PANTHER:PTHR11875	PANTHER:PTHR11875:SF60
SUPFAM:SSF143113	UniParc:UPI000210A989	ArrayExpress:VIT_14s0108g00510	EnsemblPlantsGene:VIT_14s0108g00510	EnsemblPlants:VIT_14s0108g00510.t01	unigene:Vvi.3346
RefSeq:XP_002283325	RefSeq:XP_002283325.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr14:-:29282506..29288980

Molecular Weight (calculated)

28486.9 Da

IEP (calculated)

4.219

GRAVY (calculated)

-0.778

Length

246 amino acids

Sequence
(BLAST)

001: MVADKGKKSK VSDRIVEDDA DHIDGELVLS IEKLQELQDE LEKVNEEASD KVLEVEQKYN EIRRPVYVKR NEIIKSIPDF WLTAFLSHPA LCDLLSEEDQ
101: KIFKYLDSLE VEDFKDVKSG YSIAFNFNQN PYFEDTKLTK TFTFFDEGTT KITGTAIKWK EGMGASNGVN HDKKNKRPFA EESFFAWFSE TQQKDIMEGL
201: QDEVAEIIKE DLWPNPLKYF NNADEEESDG DEDDDEAYRR TFGTVA

Best Arabidopsis Sequence Match ( AT1G18800.1 )
(BLAST)

001: MVTDKSKKAK TEEENVEQID AELVLSIEKL QEIQDDLEKI NEKASDEVLE VEQKYNVIRK PVYDKRNEII KTIPDFWLTA FLSHPALGEL LTEEDQKIFK
101: YLSSLDVEDA KDVKSGYSIT FSFNPNPFFE DGKLTKTFTF LEEGTTKITA TPIKWKEGKG LANGVNHEKN GNKRALPEES FFTWFSDAQH KEDVEDEMQD
201: EQVADIIKED LWPNPLTYFN NDADEEDFDG DDDGDEEEKE GDSDEDDDEE DEVGEE

Arabidopsis Description

NRP2NRP2 [Source:UniProtKB/TrEMBL;Acc:A0A178W8U0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.