CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU92877

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G18800.1	OQU92877	AT5G09320.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G344900.1	Wheat	cytosol	70.82	71.94
TraesCS2D01G323500.1	Wheat	cytosol	70.82	71.94
TraesCS2B01G342400.1	Wheat	cytosol	69.65	70.75
Os04t0459700-02	Rice	nucleus	70.82	70.27
EES07035	Sorghum	cytosol	63.42	64.94
KRH16731	Soybean	cytosol, mitochondrion, nucleus	20.23	59.77
GSMUA_Achr10P...	Banana	nucleus	58.75	58.75
GSMUA_Achr4P00490_001	Banana	cytosol	58.37	58.59
GSMUA_Achr7P21000_001	Banana	cytosol	56.03	57.14
GSMUA_Achr6P10690_001	Banana	nucleus	56.42	56.86
VIT_14s0108g00510.t01	Wine grape	cytosol	54.09	56.5
CDX83813	Canola	cytosol	55.25	56.13
CDX96698	Canola	cytosol	54.86	55.73
AT1G18800.1	Thale cress	cytosol	55.25	55.47
Bra016541.1-P	Field mustard	cytosol	48.64	53.42
KRH63352	Soybean	nucleus	54.09	53.05
KRH54545	Soybean	nucleus	54.09	52.65
Solyc02g067370.2.1	Tomato	nucleus	50.97	51.57
KRH56918	Soybean	nucleus	50.97	51.17
PGSC0003DMT400017852	Potato	cytosol	50.58	50.98
KRH03467	Soybean	nucleus	50.58	50.39
CDY26724	Canola	cytosol	48.25	49.01
KRH65521	Soybean	cytosol	19.07	49.0
KRH65520	Soybean	nucleus	20.23	47.27
AT1G74560.3	Thale cress	cytosol	48.25	46.97
Bra025687.1-P	Field mustard	cytosol	42.02	46.35
CDY19242	Canola	cytosol	45.91	45.56
KRH75776	Soybean	cytosol	16.34	44.21
KRH49525	Soybean	cytosol	19.84	31.1
OQU75826	Sorghum	nucleus	26.46	17.85
KXG22431	Sorghum	nucleus	24.9	17.11

Protein Annotations

MapMan:12.2.8	Gene3D:3.30.1120.90	EntrezGene:8057472	UniProt:C5Y9U1	ncoils:Coil	EnsemblPlants:EES12291
ProteinID:EES12291	ProteinID:EES12291.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:NAP-like_sf	InterPro:NAP_family
PFAM:PF00956	PANTHER:PTHR11875	PANTHER:PTHR11875:SF68	EnsemblPlantsGene:SORBI_3006G106200	SUPFAM:SSF143113	unigene:Sbi.5435
UniParc:UPI0001A87312	RefSeq:XP_002447963.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:47610470..47614542

Molecular Weight (calculated)

29771.2 Da

IEP (calculated)

4.025

GRAVY (calculated)

-0.944

Length

257 amino acids

Sequence
(BLAST)

001: MRTAEEKGKR ARTDGAEEDG GQPIDRALLL SIEKLQEIQD QIEKVNEEAS NKVLEVEQKY NEIRRPVYVR RNEMIQKIPD FWLTAFLSHP MLSDLLTEDD
101: QQIFKHLESM FVDESEDIKS GCSITLSFSP NPYFEDQKLT KEYSINDDGT VTVKATSIKW KAGMDIVNGK TCDKKGDKRL LVDESFFTWF SNTEDKSFAH
201: GEMDQVADVI KEDLWPNPLK YFNNELEGEF ELEDDEEEGS DEEAEDEDED KEDEEEP

Best Arabidopsis Sequence Match ( AT1G18800.1 )
(BLAST)

001: MVTDKSKKAK TEEENVEQID AELVLSIEKL QEIQDDLEKI NEKASDEVLE VEQKYNVIRK PVYDKRNEII KTIPDFWLTA FLSHPALGEL LTEEDQKIFK
101: YLSSLDVEDA KDVKSGYSIT FSFNPNPFFE DGKLTKTFTF LEEGTTKITA TPIKWKEGKG LANGVNHEKN GNKRALPEES FFTWFSDAQH KEDVEDEMQD
201: EQVADIIKED LWPNPLTYFN NDADEEDFDG DDDGDEEEKE GDSDEDDDEE DEVGEE

Arabidopsis Description

NRP2NRP2 [Source:UniProtKB/TrEMBL;Acc:A0A178W8U0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.