Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr8P18180_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G18800.1 | GSMUA_Achr8P18180_001 | AT5G09320.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P10690_001 | Banana | nucleus | 87.55 | 88.24 |
| GSMUA_Achr4P00490_001 | Banana | cytosol | 78.21 | 78.52 |
| VIT_14s0108g00510.t01 | Wine grape | cytosol | 73.54 | 76.83 |
| GSMUA_Achr7P21000_001 | Banana | cytosol | 72.76 | 74.21 |
| KRH16731 | Soybean | cytosol, mitochondrion, nucleus | 23.74 | 70.11 |
| Solyc02g067370.2.1 | Tomato | nucleus | 68.48 | 69.29 |
| PGSC0003DMT400017852 | Potato | cytosol | 68.48 | 69.02 |
| TraesCS6B01G227700.1 | Wheat | nucleus | 66.93 | 68.53 |
| TraesCS6D01G185800.1 | Wheat | golgi | 66.54 | 68.13 |
| TraesCS6A01G202200.1 | Wheat | nucleus | 66.54 | 68.13 |
| CDX83813 | Canola | cytosol | 66.93 | 67.98 |
| HORVU6Hr1G051930.1 | Barley | nucleus | 66.93 | 67.98 |
| AT1G18800.1 | Thale cress | cytosol | 67.7 | 67.97 |
| Os02t0576700-01 | Rice | extracellular | 66.54 | 67.86 |
| CDX96698 | Canola | cytosol | 66.54 | 67.59 |
| Zm00001d050874_P001 | Maize | extracellular | 65.37 | 66.93 |
| EES07035 | Sorghum | cytosol | 65.37 | 66.93 |
| Bra016541.1-P | Field mustard | cytosol | 60.31 | 66.24 |
| KRH63352 | Soybean | nucleus | 66.93 | 65.65 |
| KRH56918 | Soybean | nucleus | 64.98 | 65.23 |
| Zm00001d016935_P001 | Maize | extracellular | 65.37 | 65.12 |
| KRH65521 | Soybean | cytosol | 25.29 | 65.0 |
| KRH54545 | Soybean | nucleus | 66.54 | 64.77 |
| KRH03467 | Soybean | nucleus | 64.2 | 63.95 |
| TraesCS2D01G323500.1 | Wheat | cytosol | 62.65 | 63.64 |
| TraesCS2B01G342400.1 | Wheat | cytosol | 62.65 | 63.64 |
| TraesCS2A01G344900.1 | Wheat | cytosol | 62.26 | 63.24 |
| KRH75776 | Soybean | cytosol | 22.57 | 61.05 |
| CDY26724 | Canola | cytosol | 59.92 | 60.87 |
| KRH65520 | Soybean | nucleus | 25.29 | 59.09 |
| Os04t0459700-02 | Rice | nucleus | 59.53 | 59.07 |
| EES12291 | Sorghum | cytosol | 58.75 | 58.75 |
| AT1G74560.3 | Thale cress | cytosol | 59.92 | 58.33 |
| CDY19242 | Canola | cytosol | 57.98 | 57.53 |
| Bra025687.1-P | Field mustard | cytosol | 52.14 | 57.51 |
| KRH49525 | Soybean | cytosol | 28.4 | 44.51 |
| GSMUA_Achr7P09020_001 | Banana | nucleus | 30.35 | 21.02 |
| GSMUA_AchrUn_... | Banana | nucleus | 28.79 | 20.96 |
| GSMUA_Achr6P00890_001 | Banana | nucleus | 29.57 | 20.54 |
| GSMUA_Achr2P16760_001 | Banana | mitochondrion, nucleus | 29.18 | 18.47 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 29.57 | 17.88 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P18820_001 | EnsemblPlants:GSMUA_Achr10T18820_001 | EnsemblPlantsGene:GSMUA_Achr10G18820_001 | Gene3D:3.30.1120.90 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006334 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
| InterPro:NAP-like_sf | InterPro:NAP_family | ncoils:Coil | PANTHER:PTHR11875 | PANTHER:PTHR11875:SF60 | PFAM:PF00956 |
| SEG:seg | SUPFAM:SSF143113 | UniParc:UPI0002958073 | UniProt:M0RJF7 | MapMan:12.2.8 | : |
Description
SET, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G18820_001]
Coordinates
chr10:+:25386163..25395821
Molecular Weight (calculated)
29299.0 Da
IEP (calculated)
3.890
GRAVY (calculated)
-0.929
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MVADKGKKSK VEEEASDPID GELVLSIEKL QEIQDEIEKV NEEASDKVLE VEQKYNEIRR PIYKRRNEII QSIPDFWLTA FLSHPVLGDL LSEEDQKIFK
101: YLVSLDVEDS KDVKSGYSVT FNFSPNPYFE DASLTKTYSF YDEGTTNITG TTIKWKEGMN VANGVAHEKE GGKRPLAEES SFFSWFSETQ QKNLTEGFSD
201: EVAEIIKEDL WPNPLKYFNN EADEEDFDGD EDDDEKGTDF DDEDESGGDE EGDGDDN
101: YLVSLDVEDS KDVKSGYSVT FNFSPNPYFE DASLTKTYSF YDEGTTNITG TTIKWKEGMN VANGVAHEKE GGKRPLAEES SFFSWFSETQ QKNLTEGFSD
201: EVAEIIKEDL WPNPLKYFNN EADEEDFDGD EDDDEKGTDF DDEDESGGDE EGDGDDN
001: MVTDKSKKAK TEEENVEQID AELVLSIEKL QEIQDDLEKI NEKASDEVLE VEQKYNVIRK PVYDKRNEII KTIPDFWLTA FLSHPALGEL LTEEDQKIFK
101: YLSSLDVEDA KDVKSGYSIT FSFNPNPFFE DGKLTKTFTF LEEGTTKITA TPIKWKEGKG LANGVNHEKN GNKRALPEES FFTWFSDAQH KEDVEDEMQD
201: EQVADIIKED LWPNPLTYFN NDADEEDFDG DDDGDEEEKE GDSDEDDDEE DEVGEE
101: YLSSLDVEDA KDVKSGYSIT FSFNPNPFFE DGKLTKTFTF LEEGTTKITA TPIKWKEGKG LANGVNHEKN GNKRALPEES FFTWFSDAQH KEDVEDEMQD
201: EQVADIIKED LWPNPLTYFN NDADEEDFDG DDDGDEEEKE GDSDEDDDEE DEVGEE
Arabidopsis Description
NRP2NRP2 [Source:UniProtKB/TrEMBL;Acc:A0A178W8U0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.