Factsheet for GSMUA_Achr6P00890_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P09020_001	Banana	nucleus	84.59	84.37
GSMUA_Achr2P16760_001	Banana	mitochondrion, nucleus	82.43	75.12
KRH23302	Soybean	nucleus	65.95	73.27
VIT_09s0002g02330.t01	Wine grape	nucleus	74.59	72.44
OQU75826	Sorghum	nucleus	73.78	71.65
Os06t0149400-01	Rice	nucleus	72.97	71.43
PGSC0003DMT400006378	Potato	nucleus	48.38	71.31
KRH10020	Soybean	nucleus	70.54	71.31
GSMUA_Achr10P...	Banana	endoplasmic reticulum	81.89	71.29
HORVU1Hr1G048890.1	Barley	nucleus	36.49	71.05
Zm00001d045352_P002	Maize	extracellular, mitochondrion	72.7	70.79
VIT_11s0016g02050.t01	Wine grape	nucleus	73.51	70.47
Solyc03g121700.2.1	Tomato	nucleus	70.81	70.43
TraesCS7A01G102400.1	Wheat	nucleus	71.62	69.19
TraesCS7D01G096300.1	Wheat	nucleus	71.35	69.11
TraesCS4A01G401100.1	Wheat	nucleus	70.81	68.59
Zm00001d036177_P001	Maize	nucleus	66.49	67.03
GSMUA_AchrUn_...	Banana	nucleus	62.7	65.72
CDX97517	Canola	nucleus	44.86	60.14
HORVU7Hr1G064790.1	Barley	nucleus	13.78	60.0
HORVU7Hr1G064820.1	Barley	nucleus	13.78	60.0
Bra027399.1-P	Field mustard	nucleus	44.59	59.78
CDY23642	Canola	nucleus	46.49	58.5
AT3G13782.2	Thale cress	cytosol	47.3	55.2
HORVU2Hr1G066940.1	Barley	nucleus	11.62	51.81
HORVU4Hr1G081230.2	Barley	nucleus	14.05	50.0
TraesCS3A01G357000.1	Wheat	mitochondrion	32.16	48.18
GSMUA_Achr10P...	Banana	nucleus	20.54	29.57
GSMUA_Achr6P10690_001	Banana	nucleus	20.27	29.41
GSMUA_Achr7P21000_001	Banana	cytosol	19.19	28.17
GSMUA_Achr4P00490_001	Banana	cytosol	19.46	28.12
HORVU2Hr1G033000.1	Barley	cytosol	15.14	23.05

Protein Annotations

EnsemblPlants:GSMUA_Achr6P00890_001	EnsemblPlants:GSMUA_Achr6T00890_001	EnsemblPlantsGene:GSMUA_Achr6G00890_001	Gene3D:3.30.1120.90	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
InterPro:NAP-like_sf	InterPro:NAP_family	ncoils:Coil	PANTHER:PTHR11875	PANTHER:PTHR11875:SF101	PFAM:PF00956
SEG:seg	SUPFAM:SSF143113	UniParc:UPI000295FA15	UniProt:M0T337	MapMan:12.2.6	:

Description

NAP domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G00890_001]

Coordinates

chr6:+:610949..616469

Molecular Weight (calculated)

42608.7 Da

IEP (calculated)

4.151

GRAVY (calculated)

-1.042

Length

370 amino acids

Sequence
(BLAST)

001: MRNDNHQDGF NLSDLRAAMS EEDRVGLVNA LKDKLQSLAG KHTDVLETLS AAVRKRVEVL REIQNQHDEL EAKFFEERAV LEAKYQKLYE PLYTKRYEIV
101: NGVVEVDGIK NESSVETLAE DKASEEKGVP DFWLTALKTN EVLAEEIQER DEEALKYLKD IKWCRIDNPK GFKLEFFFNS NPYFKNSVLT KTYHMIDEHE
201: PILEKAIGTD IEWFPGKCVT QKIVKKKPKK GSKNAKPITK TEDCESFFNF FNPPEVPDDD ADIDEETAEQ LQSQMELDYD IGSTIRDKII PHAVSWFTGE
301: AVQDDDAEIE DDEDGEDEED EDEDEDEDDE DEDDEDEDEE ENGKSKKKSA TRQKKSGGEQ VDRPAECKQQ

Best Arabidopsis Sequence Match ( AT2G19480.3 )
(BLAST)

001: MSNDKDSMNM SDLSTALNEE DRAGLVNALK NKLQNLAGQH SDVLENLTPP VRKRVEFLRE IQNQYDEMEA KFFEERAALE AKYQKLYQPL YTKRYEIVNG
101: VVEVEGAAEE VKSEQGEDKS AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY FKNTVLTKTY HMIDEDEPIL
201: EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE
301: ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KAGRSQLAEG QAGERPPECK QQ

Arabidopsis Description

NAP1;2Nucleosome assembly protein 1;2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.