Factsheet for TraesCS4A01G401100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G102400.1	Wheat	nucleus	95.29	95.04
Os06t0149400-01	Rice	nucleus	85.86	86.77
HORVU1Hr1G048890.1	Barley	nucleus	42.41	85.26
OQU75826	Sorghum	nucleus	82.72	82.94
Zm00001d045352_P002	Maize	extracellular, mitochondrion	80.89	81.32
Zm00001d036177_P001	Maize	nucleus	75.92	79.02
HORVU7Hr1G064790.1	Barley	nucleus	17.28	77.65
HORVU7Hr1G064820.1	Barley	nucleus	17.28	77.65
GSMUA_Achr7P09020_001	Banana	nucleus	68.85	70.89
GSMUA_Achr6P00890_001	Banana	nucleus	68.59	70.81
VIT_09s0002g02330.t01	Wine grape	nucleus	70.42	70.6
KRH23302	Soybean	nucleus	61.52	70.57
VIT_11s0016g02050.t01	Wine grape	nucleus	70.94	70.21
Solyc03g121700.2.1	Tomato	nucleus	67.8	69.62
PGSC0003DMT400006378	Potato	nucleus	44.5	67.73
KRH10020	Soybean	nucleus	64.14	66.94
GSMUA_Achr2P16760_001	Banana	mitochondrion, nucleus	69.37	65.27
TraesCS1A01G360500.1	Wheat	nucleus	66.23	63.73
HORVU4Hr1G081230.2	Barley	nucleus	17.28	63.46
GSMUA_Achr10P...	Banana	endoplasmic reticulum	69.9	62.82
HORVU2Hr1G066940.1	Barley	nucleus	12.83	59.04
CDX97517	Canola	nucleus	39.79	55.07
Bra027399.1-P	Field mustard	nucleus	39.53	54.71
TraesCS3A01G357000.1	Wheat	mitochondrion	35.08	54.25
CDY23642	Canola	nucleus	41.36	53.74
AT3G13782.2	Thale cress	cytosol	43.98	53.0
TraesCS6A01G202200.1	Wheat	nucleus	19.11	29.08
TraesCS2A01G344900.1	Wheat	cytosol	18.32	27.67
HORVU2Hr1G033000.1	Barley	cytosol	14.66	23.05

Protein Annotations

EnsemblPlants:TraesCS4A01G401100.1	EnsemblPlantsGene:TraesCS4A01G401100	Gene3D:3.30.1120.90	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:NAP-like_sf
InterPro:NAP_family	PANTHER:PTHR11875	PANTHER:PTHR11875:SF98	PFAM:PF00956	SEG:seg	SUPFAM:SSF143113
MapMan:12.2.6	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:675131531..675135181

Molecular Weight (calculated)

42839.7 Da

IEP (calculated)

3.991

GRAVY (calculated)

-0.958

Length

382 amino acids

Sequence
(BLAST)

001: MGGEKENLDL SDLNSSLPAA AAALSAEDRV GLVNALKDKL QSLAGQHADV LESLSPNVRT RVEFLRGIQS QHDEIEAKFF EERAALEAKY QKLYEPLYAK
101: RYDIVNGVVE VDGAAKEPTS ENAAEGGDSD AKGIPDFWLT ALKTNDVLTE EIQERDEPVL KYLKDIKWSR IDDPKGFKLE FFIDTNPFFK NSVLTKSYHM
201: VDEDDPILEK AIGTEIEWYP GKNVTQKILK KKPKKGSKNT KPITKTEECE SFFNFFSPPQ VPDDDEDIDE EAADELQGQM EHDYDIGSTI RDKIIPHAVS
301: WFTGEAVQAE DFDDMEDGDE DDDDDDDDDE EDDEDDEDED EDDDEDEEEL SKPTKKVAGK PKGPAKGGAQ GNAEQPTECK QQ

Best Arabidopsis Sequence Match ( AT2G19480.1 )
(BLAST)

001: MSNDKDSMNM SDLSTALNEE DRAGLVNALK NKLQNLAGQH SDVLENLTPP VRKRVEFLRE IQNQYDEMEA KFFEERAALE AKYQKLYQPL YTKRYEIVNG
101: VVEVEGAAEE VKSEQGEDKS AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY FKNTVLTKTY HMIDEDEPIL
201: EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE
301: ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KSSAGHKKAG RSQLAEGQAG ERPPECKQQ

Arabidopsis Description

NAP1;2Nucleosome assembly protein 1;2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.