Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS4A01G088300.1 | |
| TraesCS4B01G215900.1 | |
| TraesCS4D01G216400.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G18800.1 | TraesCS4A01G088300.1 | AT5G09320.1 | 21798944 |
| AT1G18800.1 | TraesCS4B01G215900.1 | AT5G09320.1 | 21798944 |
| AT1G18800.1 | TraesCS4D01G216400.1 | AT5G09320.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G185800.1 | Wheat | golgi | 100.0 | 100.0 |
| TraesCS6B01G227700.1 | Wheat | nucleus | 99.6 | 99.6 |
| HORVU6Hr1G051930.1 | Barley | nucleus | 98.01 | 97.23 |
| Os02t0576700-01 | Rice | extracellular | 91.24 | 90.87 |
| EES07035 | Sorghum | cytosol | 84.46 | 84.46 |
| Zm00001d050874_P001 | Maize | extracellular | 84.06 | 84.06 |
| Zm00001d016935_P001 | Maize | extracellular | 83.27 | 81.01 |
| KRH16731 | Soybean | cytosol, mitochondrion, nucleus | 23.11 | 66.67 |
| GSMUA_Achr10P... | Banana | nucleus | 68.13 | 66.54 |
| TraesCS2A01G344900.1 | Wheat | cytosol | 66.93 | 66.4 |
| CDX83813 | Canola | cytosol | 66.14 | 65.61 |
| VIT_14s0108g00510.t01 | Wine grape | cytosol | 64.14 | 65.45 |
| CDX96698 | Canola | cytosol | 65.74 | 65.22 |
| GSMUA_Achr7P21000_001 | Banana | cytosol | 65.34 | 65.08 |
| AT1G18800.1 | Thale cress | cytosol | 66.14 | 64.84 |
| GSMUA_Achr4P00490_001 | Banana | cytosol | 65.74 | 64.45 |
| GSMUA_Achr6P10690_001 | Banana | nucleus | 64.94 | 63.92 |
| Bra016541.1-P | Field mustard | cytosol | 59.36 | 63.68 |
| KRH65521 | Soybean | cytosol | 23.9 | 60.0 |
| KRH63352 | Soybean | nucleus | 62.55 | 59.92 |
| PGSC0003DMT400017852 | Potato | cytosol | 60.56 | 59.61 |
| KRH54545 | Soybean | nucleus | 62.55 | 59.47 |
| Solyc02g067370.2.1 | Tomato | nucleus | 60.16 | 59.45 |
| KRH03467 | Soybean | nucleus | 59.36 | 57.75 |
| KRH56918 | Soybean | nucleus | 58.57 | 57.42 |
| CDY26724 | Canola | cytosol | 57.77 | 57.31 |
| KRH75776 | Soybean | cytosol | 21.12 | 55.79 |
| KRH65520 | Soybean | nucleus | 24.3 | 55.45 |
| CDY19242 | Canola | cytosol | 56.97 | 55.21 |
| Bra025687.1-P | Field mustard | cytosol | 49.8 | 53.65 |
| AT1G74560.3 | Thale cress | cytosol | 56.18 | 53.41 |
| KRH49525 | Soybean | cytosol | 24.7 | 37.8 |
| TraesCS4A01G401100.1 | Wheat | nucleus | 29.08 | 19.11 |
| TraesCS7A01G102400.1 | Wheat | nucleus | 28.69 | 18.8 |
| TraesCS1A01G360500.1 | Wheat | nucleus | 24.7 | 15.62 |
| TraesCS3A01G357000.1 | Wheat | mitochondrion | 13.94 | 14.17 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G202200.1 | EnsemblPlantsGene:TraesCS6A01G202200 | Gene3D:3.30.1120.90 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006334 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | InterPro:NAP-like_sf |
| InterPro:NAP_family | ncoils:Coil | PANTHER:PTHR11875 | PANTHER:PTHR11875:SF68 | PFAM:PF00956 | SEG:seg |
| SUPFAM:SSF143113 | MapMan:12.2.8 | : | : | : | : |
Description
No Description!
Coordinates
chr6A:-:337723562..337727640
Molecular Weight (calculated)
28822.9 Da
IEP (calculated)
3.999
GRAVY (calculated)
-0.875
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MTAPADKGKK AKTDTDVGEE NEQIDGALVL SIERLQEIQD ELEKVNEEAS DKVLEVEQKY SEIRRPVYLR RCDIIKTIPD FWLTAFLSHP LLSELLTEED
101: QKMFKYLESV DVDDSKDVKS GYSITLNFSE NPYFEDRKLT KSYAFADDGT TTINATSIKW KEGMEINGNA IKKKGSKRPL VEESFFTWFT DTEHKSLADG
201: VQDEVAEIIK EDLWPNPLKY FNNEVEEFEG DDEDEEGSDG EDAEEDEDEE N
101: QKMFKYLESV DVDDSKDVKS GYSITLNFSE NPYFEDRKLT KSYAFADDGT TTINATSIKW KEGMEINGNA IKKKGSKRPL VEESFFTWFT DTEHKSLADG
201: VQDEVAEIIK EDLWPNPLKY FNNEVEEFEG DDEDEEGSDG EDAEEDEDEE N
001: MVTDKSKKAK TEEENVEQID AELVLSIEKL QEIQDDLEKI NEKASDEVLE VEQKYNVIRK PVYDKRNEII KTIPDFWLTA FLSHPALGEL LTEEDQKIFK
101: YLSSLDVEDA KDVKSGYSIT FSFNPNPFFE DGKLTKTFTF LEEGTTKITA TPIKWKEGKG LANGVNHEKN GNKRALPEES FFTWFSDAQH KEDVEDEMQD
201: EQVADIIKED LWPNPLTYFN NDADEEDFDG DDDGDEEEKE GDSDEDDDEE DEVGEE
101: YLSSLDVEDA KDVKSGYSIT FSFNPNPFFE DGKLTKTFTF LEEGTTKITA TPIKWKEGKG LANGVNHEKN GNKRALPEES FFTWFSDAQH KEDVEDEMQD
201: EQVADIIKED LWPNPLTYFN NDADEEDFDG DDDGDEEEKE GDSDEDDDEE DEVGEE
Arabidopsis Description
NRP2NRP2 [Source:UniProtKB/TrEMBL;Acc:A0A178W8U0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.