Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr8P18180_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G18800.1 | GSMUA_Achr8P18180_001 | AT5G09320.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P00490_001 | Banana | cytosol | 86.9 | 85.55 |
| VIT_14s0108g00510.t01 | Wine grape | cytosol | 72.62 | 74.39 |
| GSMUA_Achr10P... | Banana | nucleus | 74.21 | 72.76 |
| KRH16731 | Soybean | cytosol, mitochondrion, nucleus | 25.0 | 72.41 |
| GSMUA_Achr6P10690_001 | Banana | nucleus | 71.03 | 70.2 |
| TraesCS6D01G185800.1 | Wheat | golgi | 65.08 | 65.34 |
| TraesCS6B01G227700.1 | Wheat | nucleus | 65.08 | 65.34 |
| TraesCS6A01G202200.1 | Wheat | nucleus | 65.08 | 65.34 |
| Os02t0576700-01 | Rice | extracellular | 65.08 | 65.08 |
| HORVU6Hr1G051930.1 | Barley | nucleus | 65.08 | 64.82 |
| EES07035 | Sorghum | cytosol | 63.89 | 64.14 |
| AT1G18800.1 | Thale cress | cytosol | 64.29 | 63.28 |
| KRH63352 | Soybean | nucleus | 65.48 | 62.98 |
| CDX83813 | Canola | cytosol | 63.1 | 62.85 |
| Zm00001d050874_P001 | Maize | extracellular | 62.3 | 62.55 |
| KRH54545 | Soybean | nucleus | 65.48 | 62.5 |
| CDX96698 | Canola | cytosol | 62.7 | 62.45 |
| Zm00001d016935_P001 | Maize | extracellular | 63.49 | 62.02 |
| PGSC0003DMT400017852 | Potato | cytosol | 62.7 | 61.96 |
| TraesCS2D01G323500.1 | Wheat | cytosol | 61.9 | 61.66 |
| TraesCS2B01G342400.1 | Wheat | cytosol | 61.9 | 61.66 |
| Solyc02g067370.2.1 | Tomato | nucleus | 61.9 | 61.42 |
| TraesCS2A01G344900.1 | Wheat | cytosol | 61.51 | 61.26 |
| KRH65521 | Soybean | cytosol | 24.21 | 61.0 |
| Bra016541.1-P | Field mustard | cytosol | 56.35 | 60.68 |
| KRH03467 | Soybean | nucleus | 61.9 | 60.47 |
| KRH56918 | Soybean | nucleus | 61.11 | 60.16 |
| KRH75776 | Soybean | cytosol | 21.43 | 56.84 |
| Os04t0459700-02 | Rice | nucleus | 58.33 | 56.76 |
| CDY26724 | Canola | cytosol | 56.35 | 56.13 |
| EES12291 | Sorghum | cytosol | 57.14 | 56.03 |
| KRH65520 | Soybean | nucleus | 24.21 | 55.45 |
| AT1G74560.3 | Thale cress | cytosol | 57.94 | 55.3 |
| Bra025687.1-P | Field mustard | cytosol | 50.4 | 54.51 |
| CDY19242 | Canola | cytosol | 54.76 | 53.28 |
| KRH49525 | Soybean | cytosol | 25.79 | 39.63 |
| GSMUA_Achr7P09020_001 | Banana | nucleus | 28.97 | 19.68 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.38 | 19.55 |
| GSMUA_Achr6P00890_001 | Banana | nucleus | 28.17 | 19.19 |
| GSMUA_Achr2P16760_001 | Banana | mitochondrion, nucleus | 26.98 | 16.75 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 26.98 | 16.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P21000_001 | EnsemblPlants:GSMUA_Achr7T21000_001 | EnsemblPlantsGene:GSMUA_Achr7G21000_001 | Gene3D:3.30.1120.90 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006334 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
| InterPro:NAP-like_sf | InterPro:NAP_family | ncoils:Coil | PANTHER:PTHR11875 | PANTHER:PTHR11875:SF68 | PFAM:PF00956 |
| SEG:seg | SUPFAM:SSF143113 | UniParc:UPI0002959D5E | UniProt:M0TJD7 | MapMan:12.2.8 | : |
Description
Putative Protein SET [Source:GMGC_GENE;Acc:GSMUA_Achr7G21000_001]
Coordinates
chr7:-:23920274..23925394
Molecular Weight (calculated)
29171.6 Da
IEP (calculated)
4.221
GRAVY (calculated)
-0.828
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MGADKGKKSK VAEEGADGAE PEHIDGELVL SIEKLQEIQD ELEKINEEAS DKVFEVEQKY NEIRRPVYVR RAEIIKHIPD FWLTAFLSHP ALGDLLSEKD
101: QEIFKFMRSL DVEDFKDMKT GYSITFNFSN NPYFEDTKLT KTYSFTDEGT TNVTGTTIKW KEGMEHIANG DAHKKKGNKR LFAEESFFSW FNDNQEKDLS
201: EGVMDEVAEI IKEDLWPNPL KYFNNEADED DFDGEEDDEE VYFLSFLSHN NG
101: QEIFKFMRSL DVEDFKDMKT GYSITFNFSN NPYFEDTKLT KTYSFTDEGT TNVTGTTIKW KEGMEHIANG DAHKKKGNKR LFAEESFFSW FNDNQEKDLS
201: EGVMDEVAEI IKEDLWPNPL KYFNNEADED DFDGEEDDEE VYFLSFLSHN NG
001: MVTDKSKKAK TEEENVEQID AELVLSIEKL QEIQDDLEKI NEKASDEVLE VEQKYNVIRK PVYDKRNEII KTIPDFWLTA FLSHPALGEL LTEEDQKIFK
101: YLSSLDVEDA KDVKSGYSIT FSFNPNPFFE DGKLTKTFTF LEEGTTKITA TPIKWKEGKG LANGVNHEKN GNKRALPEES FFTWFSDAQH KEDVEDEMQD
201: EQVADIIKED LWPNPLTYFN NDADEEDFDG DDDGDEEEKE GDSDEDDDEE DEVGEE
101: YLSSLDVEDA KDVKSGYSIT FSFNPNPFFE DGKLTKTFTF LEEGTTKITA TPIKWKEGKG LANGVNHEKN GNKRALPEES FFTWFSDAQH KEDVEDEMQD
201: EQVADIIKED LWPNPLTYFN NDADEEDFDG DDDGDEEEKE GDSDEDDDEE DEVGEE
Arabidopsis Description
NRP2NRP2 [Source:UniProtKB/TrEMBL;Acc:A0A178W8U0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.