Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr8P18180_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G18800.1 | GSMUA_Achr8P18180_001 | AT5G09320.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P21000_001 | Banana | cytosol | 85.55 | 86.9 |
| GSMUA_Achr10P... | Banana | nucleus | 78.52 | 78.21 |
| VIT_14s0108g00510.t01 | Wine grape | cytosol | 73.05 | 76.02 |
| GSMUA_Achr6P10690_001 | Banana | nucleus | 75.0 | 75.29 |
| KRH16731 | Soybean | cytosol, mitochondrion, nucleus | 22.66 | 66.67 |
| TraesCS6B01G227700.1 | Wheat | nucleus | 64.84 | 66.14 |
| PGSC0003DMT400017852 | Potato | cytosol | 65.62 | 65.88 |
| Os02t0576700-01 | Rice | extracellular | 64.84 | 65.87 |
| Solyc02g067370.2.1 | Tomato | nucleus | 65.23 | 65.75 |
| EES07035 | Sorghum | cytosol | 64.45 | 65.74 |
| TraesCS6A01G202200.1 | Wheat | nucleus | 64.45 | 65.74 |
| TraesCS6D01G185800.1 | Wheat | golgi | 64.45 | 65.74 |
| AT1G18800.1 | Thale cress | cytosol | 65.62 | 65.62 |
| CDX83813 | Canola | cytosol | 64.45 | 65.22 |
| CDX96698 | Canola | cytosol | 64.06 | 64.82 |
| HORVU6Hr1G051930.1 | Barley | nucleus | 64.06 | 64.82 |
| Zm00001d050874_P001 | Maize | extracellular | 63.28 | 64.54 |
| Zm00001d016935_P001 | Maize | extracellular | 64.84 | 64.34 |
| KRH63352 | Soybean | nucleus | 65.62 | 64.12 |
| KRH54545 | Soybean | nucleus | 65.23 | 63.26 |
| Bra016541.1-P | Field mustard | cytosol | 57.81 | 63.25 |
| TraesCS2D01G323500.1 | Wheat | cytosol | 62.11 | 62.85 |
| TraesCS2B01G342400.1 | Wheat | cytosol | 62.11 | 62.85 |
| TraesCS2A01G344900.1 | Wheat | cytosol | 61.72 | 62.45 |
| KRH65521 | Soybean | cytosol | 24.22 | 62.0 |
| KRH03467 | Soybean | nucleus | 61.72 | 61.24 |
| KRH56918 | Soybean | nucleus | 60.94 | 60.94 |
| Os04t0459700-02 | Rice | nucleus | 60.16 | 59.46 |
| EES12291 | Sorghum | cytosol | 58.59 | 58.37 |
| KRH75776 | Soybean | cytosol | 21.48 | 57.89 |
| KRH65520 | Soybean | nucleus | 24.61 | 57.27 |
| CDY26724 | Canola | cytosol | 56.25 | 56.92 |
| AT1G74560.3 | Thale cress | cytosol | 58.2 | 56.44 |
| CDY19242 | Canola | cytosol | 54.69 | 54.05 |
| Bra025687.1-P | Field mustard | cytosol | 48.83 | 53.65 |
| KRH49525 | Soybean | cytosol | 27.34 | 42.68 |
| GSMUA_AchrUn_... | Banana | nucleus | 28.91 | 20.96 |
| GSMUA_Achr7P09020_001 | Banana | nucleus | 29.69 | 20.49 |
| GSMUA_Achr6P00890_001 | Banana | nucleus | 28.12 | 19.46 |
| GSMUA_Achr2P16760_001 | Banana | mitochondrion, nucleus | 28.12 | 17.73 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 27.73 | 16.71 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P00490_001 | EnsemblPlants:GSMUA_Achr4T00490_001 | EnsemblPlantsGene:GSMUA_Achr4G00490_001 | Gene3D:3.30.1120.90 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006334 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
| InterPro:NAP-like_sf | InterPro:NAP_family | ncoils:Coil | PANTHER:PTHR11875 | PANTHER:PTHR11875:SF68 | PFAM:PF00956 |
| SEG:seg | SUPFAM:SSF143113 | UniParc:UPI00029524E7 | UniProt:M0SJW6 | MapMan:12.2.8 | : |
Description
Putative Protein SET [Source:GMGC_GENE;Acc:GSMUA_Achr4G00490_001]
Coordinates
chr4:+:372177..377689
Molecular Weight (calculated)
29611.5 Da
IEP (calculated)
3.974
GRAVY (calculated)
-0.981
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MVADKGKKSK VAEPGAEGAE PEQHIDGELV LSIEKLQEIQ DELERVNEEA SDKVFEVEQK YNEIRRPVFV RRAEIIQHIP DFWLTAFLSH PALGDLLTEK
101: DQEIFKFLHS LDVEDFKDVK TGYSITFNFS NNPYFEDTKL TKTYSFNDEG TTNVTGTTIK WKDGMEHIAN GDAHEKKGNK RPFAEESFFS WFSENQQKDF
201: SEGVMDEVAE IIKEDLWPNP LKYFNNEADE EDFDGDEDDD EETDEDGEPE DDEDEE
101: DQEIFKFLHS LDVEDFKDVK TGYSITFNFS NNPYFEDTKL TKTYSFNDEG TTNVTGTTIK WKDGMEHIAN GDAHEKKGNK RPFAEESFFS WFSENQQKDF
201: SEGVMDEVAE IIKEDLWPNP LKYFNNEADE EDFDGDEDDD EETDEDGEPE DDEDEE
001: MVTDKSKKAK TEEENVEQID AELVLSIEKL QEIQDDLEKI NEKASDEVLE VEQKYNVIRK PVYDKRNEII KTIPDFWLTA FLSHPALGEL LTEEDQKIFK
101: YLSSLDVEDA KDVKSGYSIT FSFNPNPFFE DGKLTKTFTF LEEGTTKITA TPIKWKEGKG LANGVNHEKN GNKRALPEES FFTWFSDAQH KEDVEDEMQD
201: EQVADIIKED LWPNPLTYFN NDADEEDFDG DDDGDEEEKE GDSDEDDDEE DEVGEE
101: YLSSLDVEDA KDVKSGYSIT FSFNPNPFFE DGKLTKTFTF LEEGTTKITA TPIKWKEGKG LANGVNHEKN GNKRALPEES FFTWFSDAQH KEDVEDEMQD
201: EQVADIIKED LWPNPLTYFN NDADEEDFDG DDDGDEEEKE GDSDEDDDEE DEVGEE
Arabidopsis Description
NRP2NRP2 [Source:UniProtKB/TrEMBL;Acc:A0A178W8U0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.