Factsheet for Zm00001d050874_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d047863_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G18800.1	Zm00001d047863_P004	AT5G09320.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07035	Sorghum	cytosol	92.43	92.43
Zm00001d016935_P001	Maize	extracellular	92.83	90.31
TraesCS6B01G227700.1	Wheat	nucleus	84.46	84.46
TraesCS6D01G185800.1	Wheat	golgi	84.06	84.06
TraesCS6A01G202200.1	Wheat	nucleus	84.06	84.06
HORVU6Hr1G051930.1	Barley	nucleus	83.27	82.61
Os02t0576700-01	Rice	extracellular	80.88	80.56
KRH16731	Soybean	cytosol, mitochondrion, nucleus	23.11	66.67
GSMUA_Achr10P...	Banana	nucleus	66.93	65.37
VIT_14s0108g00510.t01	Wine grape	cytosol	63.74	65.04
GSMUA_Achr4P00490_001	Banana	cytosol	64.54	63.28
CDX83813	Canola	cytosol	63.74	63.24
CDX96698	Canola	cytosol	63.35	62.85
GSMUA_Achr6P10690_001	Banana	nucleus	63.74	62.75
GSMUA_Achr7P21000_001	Banana	cytosol	62.55	62.3
AT1G18800.1	Thale cress	cytosol	63.35	62.11
Bra016541.1-P	Field mustard	cytosol	56.97	61.11
Solyc02g067370.2.1	Tomato	nucleus	61.35	60.63
KRH65521	Soybean	cytosol	23.9	60.0
PGSC0003DMT400017852	Potato	cytosol	60.56	59.61
KRH63352	Soybean	nucleus	61.35	58.78
KRH54545	Soybean	nucleus	61.35	58.33
KRH03467	Soybean	nucleus	58.57	56.98
KRH56918	Soybean	nucleus	57.37	56.25
KRH65520	Soybean	nucleus	24.3	55.45
KRH75776	Soybean	cytosol	20.72	54.74
CDY26724	Canola	cytosol	54.98	54.55
CDY19242	Canola	cytosol	54.18	52.51
Bra025687.1-P	Field mustard	cytosol	48.61	52.36
AT1G74560.3	Thale cress	cytosol	54.98	52.27
KRH49525	Soybean	cytosol	25.1	38.41
Zm00001d045352_P002	Maize	extracellular, mitochondrion	29.48	19.47
Zm00001d036177_P001	Maize	nucleus	27.89	19.07
Zm00001d038851_P001	Maize	extracellular, mitochondrion	27.89	18.92
Zm00001d011130_P002	Maize	nucleus	23.11	13.71

Protein Annotations

MapMan:12.2.8	Gene3D:3.30.1120.90	EntrezGene:541933	EMBL:AF384035	ProteinID:AQK53186.1	EMBL:BT040766
ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006334
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:NAP-like_sf	InterPro:NAP_family	PFAM:PF00956
PANTHER:PTHR11875	PANTHER:PTHR11875:SF68	UniProt:Q94F79	SUPFAM:SSF143113	UniParc:UPI000009E99A	EnsemblPlantsGene:Zm00001d050874
EnsemblPlants:Zm00001d050874_P001	EnsemblPlants:Zm00001d050874_T001	SEG:seg	:	:	:

Description

NAP1-related protein 2

Coordinates

chr4:-:128050675..128059411

Molecular Weight (calculated)

28442.5 Da

IEP (calculated)

3.922

GRAVY (calculated)

-0.801

Length

251 amino acids

Sequence
(BLAST)

001: MTAPADKGKK AKTDADGGEE NEQIDGVLVL SIEKLQEIQD ELEKVNEEAS DKVMEVEQKY SEIRRPVYLK RGDIIKTIPD FWLTAFMSHP LLSELLTEED
101: QKIFKYLDSI DVDDSDVKAG YSIHLNFSEN PYFEDTKLAK TYIFADDGTT TIKASEIKWK EGMGPANGNG INKKGSKRPL VEESFFSWFG DTELKSLADG
201: VQDEVAEIIK EDLWPNPLKY FNNEVDDEFE GDEDDDDLDG DDDDEGDDLE N

Best Arabidopsis Sequence Match ( AT1G18800.1 )
(BLAST)

001: MVTDKSKKAK TEEENVEQID AELVLSIEKL QEIQDDLEKI NEKASDEVLE VEQKYNVIRK PVYDKRNEII KTIPDFWLTA FLSHPALGEL LTEEDQKIFK
101: YLSSLDVEDA KDVKSGYSIT FSFNPNPFFE DGKLTKTFTF LEEGTTKITA TPIKWKEGKG LANGVNHEKN GNKRALPEES FFTWFSDAQH KEDVEDEMQD
201: EQVADIIKED LWPNPLTYFN NDADEEDFDG DDDGDEEEKE GDSDEDDDEE DEVGEE

Arabidopsis Description

NRP2NRP2 [Source:UniProtKB/TrEMBL;Acc:A0A178W8U0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.