Factsheet for Zm00001d038851_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22431	Sorghum	nucleus	95.68	94.65
HORVU7Hr1G111180.1	Barley	cytosol	11.35	89.36
Os05t0539700-01	Rice	nucleus	86.22	87.64
TraesCS1B01G377000.1	Wheat	nucleus	82.43	84.96
TraesCS1D01G364900.1	Wheat	nucleus	82.97	83.88
TraesCS1A01G360500.1	Wheat	nucleus	82.97	77.33
HORVU1Hr1G080060.11	Barley	nucleus, plastid	78.92	70.87
VIT_09s0002g02330.t01	Wine grape	nucleus	71.89	69.82
Zm00001d011130_P002	Maize	nucleus	79.46	69.5
PGSC0003DMT400006378	Potato	nucleus	47.03	69.32
Solyc03g121700.2.1	Tomato	nucleus	69.19	68.82
VIT_11s0016g02050.t01	Wine grape	nucleus	71.62	68.65
KRH23302	Soybean	nucleus	60.0	66.67
Zm00001d045352_P002	Maize	extracellular, mitochondrion	66.76	65.0
GSMUA_AchrUn_...	Banana	nucleus	61.89	64.87
Zm00001d036177_P001	Maize	nucleus	64.05	64.58
KRH10020	Soybean	nucleus	63.24	63.93
CDX97517	Canola	nucleus	43.51	58.33
Bra027399.1-P	Field mustard	nucleus	43.24	57.97
CDY23642	Canola	nucleus	45.41	57.14
AT3G13782.2	Thale cress	cytosol	47.03	54.89
Zm00001d050874_P001	Maize	extracellular	18.92	27.89
Zm00001d016935_P001	Maize	extracellular	19.19	27.52

Protein Annotations

MapMan:12.2.6	Gene3D:3.30.1120.90	EntrezGene:542588	ProteinID:AQK88053.1	EMBL:AY100480	ncoils:Coil
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006334	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	InterPro:NAP-like_sf	InterPro:NAP_family	PFAM:PF00956	PANTHER:PTHR11875
PANTHER:PTHR11875:SF98	UniProt:Q8L8G5	SUPFAM:SSF143113	UniParc:UPI000009E04C	EnsemblPlantsGene:Zm00001d038851	EnsemblPlants:Zm00001d038851_P001
EnsemblPlants:Zm00001d038851_T001	SEG:seg	:	:	:	:

Description

Nucleosome assembly protein 1;2

Coordinates

chr6:-:165842393..165845801

Molecular Weight (calculated)

42234.4 Da

IEP (calculated)

4.143

GRAVY (calculated)

-1.026

Length

370 amino acids

Sequence
(BLAST)

001: MSDGKDSLDL SALGAAIPNS AELSAEDKAN LVASIKNTLE GLASRHTDVL ENLEPKVRKR VEKLREIQGE HDELEAKFFE ERAALEAKYQ KLYEPLYSKR
101: YEIVNGVVEI EGITKESAAE TPEEQKSGDE TSAEQKEEKG VPAFWLNAMK NHEILAEEIQ ERDEEALKYL KDIKWYRISE PKGFKLEFHF GTNMFFKNSV
201: LTKTYHMIDE DEPILEKAIG TEIEWYPGKC LTQKVLKKKP RKGSKNTKPI TKTEDCESFF NFFSPPQVPD DDEEIDEDTA EQLQNQMEQD YDIGSTIRDK
301: IIPHAVSWFT GEAAQDEDFE VMDGEDDDDE DDDDEDDEDE DDDDYDTKKT KGTAGGEGQQ GERPAECKQQ

Best Arabidopsis Sequence Match ( AT2G19480.3 )
(BLAST)

001: MSNDKDSMNM SDLSTALNEE DRAGLVNALK NKLQNLAGQH SDVLENLTPP VRKRVEFLRE IQNQYDEMEA KFFEERAALE AKYQKLYQPL YTKRYEIVNG
101: VVEVEGAAEE VKSEQGEDKS AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY FKNTVLTKTY HMIDEDEPIL
201: EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE
301: ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KAGRSQLAEG QAGERPPECK QQ

Arabidopsis Description

NAP1;2Nucleosome assembly protein 1;2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.