Factsheet for Os05t0539700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

cytosol: 15980199

nucleus: 19621931
cytosol: 19685898
plastid: 21433289
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503

gfp PMID: 15980199 doi

A Dong, Z Liu, Y Zhu, F Yu, Z Li, K Cao, WH Shen

State Key Laboratory of Genetic Engineering, Department of Biochemistry, School of Life Sciences, Fudan University, Shanghai 200433, People's Republic of China.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G111180.1	Barley	cytosol	12.36	95.74
TraesCS1B01G377000.1	Wheat	nucleus	88.19	89.42
TraesCS1D01G364900.1	Wheat	nucleus	89.29	88.8
Zm00001d038851_P001	Maize	extracellular, mitochondrion	87.64	86.22
KXG22431	Sorghum	nucleus	88.19	85.83
TraesCS1A01G360500.1	Wheat	nucleus	89.29	81.86
HORVU1Hr1G080060.11	Barley	nucleus, plastid	84.89	75.0
Os06t0611700-00	Rice	nucleus	53.85	74.52
Os01t0711800-00	Rice	nucleus	60.16	73.74
Solyc03g121700.2.1	Tomato	nucleus	73.35	71.77
VIT_09s0002g02330.t01	Wine grape	nucleus	75.0	71.65
PGSC0003DMT400006378	Potato	nucleus	48.35	70.12
VIT_11s0016g02050.t01	Wine grape	nucleus	74.18	69.95
KRH23302	Soybean	nucleus	63.74	69.67
Os05t0235600-00	Rice	nucleus	23.9	69.6
KRH10020	Soybean	nucleus	68.96	68.58
Os06t0149400-01	Rice	nucleus	70.05	67.46
GSMUA_AchrUn_...	Banana	nucleus	64.84	66.86
Zm00001d011130_P002	Maize	nucleus	73.63	63.36
CDX97517	Canola	nucleus	45.05	59.42
Bra027399.1-P	Field mustard	nucleus	44.78	59.06
CDY23642	Canola	nucleus	46.7	57.82
AT3G13782.2	Thale cress	cytosol	47.8	54.89
Os02t0576700-01	Rice	extracellular	17.86	25.79
Os04t0459700-02	Rice	nucleus	18.13	25.48

Protein Annotations

MapMan:12.2.6	Gene3D:3.30.1120.90	EntrezGene:4339460	ProteinID:AAV59408.1	EMBL:AK071120	ProteinID:BAF18089.1
ProteinID:BAS95105.1	ProteinID:EEE64526.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:NAP-like_sf
InterPro:NAP_family	EnsemblPlantsGene:Os05g0539700	EnsemblPlants:Os05t0539700-01	PFAM:PF00956	PANTHER:PTHR11875	PANTHER:PTHR11875:SF98
UniProt:Q53WK4	SUPFAM:SSF143113	UniParc:UPI00003B33DD	RefSeq:XP_015639209.1	SEG:seg	:

Description

nucleosome assembly protein 1-like protein 2, Nucleosome assembly protein 1;2, NAP1-like protein 2Similar to Nucleosome assembly protein 1. (Os05t0539700-01)

Coordinates

chr5:-:26809206..26812469

Molecular Weight (calculated)

41685.7 Da

IEP (calculated)

4.079

GRAVY (calculated)

-1.040

Length

364 amino acids

Sequence
(BLAST)

001: MSDGKDSLDL SGLGAAVPNA KELSAEDKAN LVESIKNTLQ GLAARHTDVL ESLEPKVRKR VEVLREIQSQ HDDLEAKFFE ERAALEAKYQ KMYEPLYSKR
101: YEIVNGVVEV DGVTKEAADE TPAEQKEEKG VPEFWLNAMK NHEILSEEIQ ERDEEALKYL KDIKWYRISE PKGFKLEFYF DTNPFFKNSV LTKTYHMIDE
201: DEPILEKAIG TEIEWFPGKC LTQKVLKKKP KKGSKNTKPI TKTENCESFF NFFSPPQVPD DDEEIDEDTA EQLQNQMEQD YDIGSTIRDK IIPHAVSWFT
301: GEAAQDEDFE GIMDDEDDDD EDDDDDEDED DEGDDEDDED EKKGGRVPAG EGQQGERPAE CKQQ

Best Arabidopsis Sequence Match ( AT2G19480.3 )
(BLAST)

001: MSNDKDSMNM SDLSTALNEE DRAGLVNALK NKLQNLAGQH SDVLENLTPP VRKRVEFLRE IQNQYDEMEA KFFEERAALE AKYQKLYQPL YTKRYEIVNG
101: VVEVEGAAEE VKSEQGEDKS AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY FKNTVLTKTY HMIDEDEPIL
201: EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE
301: ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KAGRSQLAEG QAGERPPECK QQ

Arabidopsis Description

NAP1;2Nucleosome assembly protein 1;2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.