Factsheet for TraesCS1B01G377000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G111180.1	Barley	cytosol	13.09	100.0
TraesCS1D01G364900.1	Wheat	nucleus	98.05	96.17
TraesCS1A01G360500.1	Wheat	nucleus	98.05	88.67
Os05t0539700-01	Rice	nucleus	89.42	88.19
Zm00001d038851_P001	Maize	extracellular, mitochondrion	84.96	82.43
KXG22431	Sorghum	nucleus	84.12	80.75
KRH23302	Soybean	nucleus	64.62	69.67
VIT_09s0002g02330.t01	Wine grape	nucleus	73.26	69.03
VIT_11s0016g02050.t01	Wine grape	nucleus	73.54	68.39
Solyc03g121700.2.1	Tomato	nucleus	70.75	68.28
PGSC0003DMT400006378	Potato	nucleus	47.63	68.13
KRH10020	Soybean	nucleus	67.41	66.12
GSMUA_AchrUn_...	Banana	nucleus	62.95	64.02
Zm00001d011130_P002	Maize	nucleus	70.75	60.05
CDX97517	Canola	nucleus	44.57	57.97
Bra027399.1-P	Field mustard	nucleus	44.29	57.61
CDY23642	Canola	nucleus	46.24	56.46
AT3G13782.2	Thale cress	cytosol	46.52	52.68
TraesCS2B01G342400.1	Wheat	cytosol	18.66	26.48
TraesCS6B01G227700.1	Wheat	nucleus	17.83	25.5

Protein Annotations

EnsemblPlants:TraesCS1B01G377000.1	EnsemblPlantsGene:TraesCS1B01G377000	Gene3D:3.30.1120.90	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:NAP-like_sf
InterPro:NAP_family	PANTHER:PTHR11875	PANTHER:PTHR11875:SF98	PFAM:PF00956	SEG:seg	SUPFAM:SSF143113
MapMan:12.2.6	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:608533342..608536490

Molecular Weight (calculated)

41047.8 Da

IEP (calculated)

4.070

GRAVY (calculated)

-1.041

Length

359 amino acids

Sequence
(BLAST)

001: MSDGKDTLDL SALGAAVPNA AELSAEDKAN LVESIKNTLQ GLAARHTDVL ESLEPKVRKR VEALREIQSQ HDEFEAKFFE ERAALEAKYQ KMYEPLYSKR
101: HDVVNGVVEA EGEAAEDQKE EVGVPDFWLN AMKNHEILAE EIQERDEEAL KYLKDIKWYR ITEPKGFKLE FHFNTNPFFK NEVLTKTYHM IDEDEPILEK
201: AIGTEIEWCP GKSLTQKVLK KKPKKGSKNT KPITKIENCE SFFNFFSPPQ VPDDDEEIDE DTAEQLQNQM EQDYDIGSTI RDKIIPHAVS WFTGEAAQDE
301: DFDGIMDDDE DDDEDDEEDE DDEEDDEEDE DDDDGDKKKG GRVPAGEGQG ERPAECKQQ

Best Arabidopsis Sequence Match ( AT4G26110.1 )
(BLAST)

001: MSNDKDSFNV SDLTAALKDE DRAGLVNALK NKLQNLAGQR SDVLENLTPN VRKRVDALRD IQSQHDELEA KFREERAILE AKYQTLYQPL YVKRYEIVNG
101: TTEVELAPED DTKVDQGEEK TAEEKGVPSF WLTALKNNDV ISEEVTERDE GALKYLKDIK WCKIEEPKGF KLEFFFDTNP YFKNTVLTKS YHMIDEDEPL
201: LEKAMGTEID WYPGKCLTQK ILKKKPKKGS KNTKPITKLE DCESFFNFFS PPEVPDEDED IDEERAEDLQ NLMEQDYDIG STIREKIIPR AVSWFTGEAM
301: EAEDFEIDDD EEDDIDEDED EEDEEDEEDD DDEDEEESKT KKKPSIGNKK GGRSQIVGEG KQDERPPECK QQ

Arabidopsis Description

NAP1;1Nucleosome assembly protein 1;1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZI2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.