CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038851_P001	Maize	extracellular, mitochondrion	94.65	95.68
Os05t0539700-01	Rice	nucleus	85.83	88.19
HORVU7Hr1G111180.1	Barley	cytosol	10.96	87.23
TraesCS1B01G377000.1	Wheat	nucleus	80.75	84.12
TraesCS1D01G364900.1	Wheat	nucleus	81.82	83.61
TraesCS1A01G360500.1	Wheat	nucleus	81.82	77.08
VIT_09s0002g02330.t01	Wine grape	nucleus	72.46	71.13
HORVU1Hr1G080060.11	Barley	nucleus, plastid	78.34	71.12
Solyc03g121700.2.1	Tomato	nucleus	70.05	70.43
PGSC0003DMT400006378	Potato	nucleus	47.06	70.12
VIT_11s0016g02050.t01	Wine grape	nucleus	71.93	69.69
Zm00001d011130_P002	Maize	nucleus	76.74	67.85
KRH23302	Soybean	nucleus	59.89	67.27
GSMUA_AchrUn_...	Banana	nucleus	62.3	66.01
OQU75826	Sorghum	nucleus	66.84	65.62
KRH10020	Soybean	nucleus	63.9	65.3
CDX97517	Canola	nucleus	44.38	60.14
Bra027399.1-P	Field mustard	nucleus	44.12	59.78
CDY23642	Canola	nucleus	46.26	58.84
AT3G13782.2	Thale cress	cytosol	47.06	55.52
EES07035	Sorghum	cytosol	18.45	27.49
EES12291	Sorghum	cytosol	17.11	24.9

Protein Annotations

MapMan:12.2.6	Gene3D:3.30.1120.90	UniProt:A0A1B6P9Z6	ncoils:Coil	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
EnsemblPlants:KXG22431	ProteinID:KXG22431	ProteinID:KXG22431.1	InterPro:NAP-like_sf	InterPro:NAP_family	PFAM:PF00956
PANTHER:PTHR11875	PANTHER:PTHR11875:SF98	EnsemblPlantsGene:SORBI_3009G213500	SUPFAM:SSF143113	UniParc:UPI00022072E0	SEG:seg

Description

hypothetical protein

Coordinates

chr9:-:55899312..55902312

Molecular Weight (calculated)

42562.6 Da

IEP (calculated)

4.108

GRAVY (calculated)

-1.036

Length

374 amino acids

Sequence
(BLAST)

001: MSDGKDALDL SAIGAALPNS AELSAEDKAH LVASIKNTLE GLASRHTDVL ENLEPKVRKR VEKLREIQGQ HDELEAKFFE ERAALEAKYQ KLYEPLYSKR
101: YEIVNGVVEV EGVTEESAAE TPAEQKGGDE TSAEPKEEKG VPAFWLNAMK NHEILAEEIQ ERDEEALKYL KDIKWYRISE PKGFKLEFHF DTNPFFKNSV
201: LTKTYHMIDE DEPILEKAIG TDIEWYPGKC LTQKVLKRKP RKGSKNTKPI TKTEDCESFF NFFSPPQVPD DDEEIDEDTA EQLQNQMEQD YDIGSTIRDK
301: IIPHAVSWFT GEAAQDEDFE VMDGEDDDDE DGDDDEEDED DEDEDDDDYD TKKTKGTAGG EGQQGERPAE CKQQ

Best Arabidopsis Sequence Match ( AT2G19480.3 )
(BLAST)

001: MSNDKDSMNM SDLSTALNEE DRAGLVNALK NKLQNLAGQH SDVLENLTPP VRKRVEFLRE IQNQYDEMEA KFFEERAALE AKYQKLYQPL YTKRYEIVNG
101: VVEVEGAAEE VKSEQGEDKS AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY FKNTVLTKTY HMIDEDEPIL
201: EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE
301: ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KAGRSQLAEG QAGERPPECK QQ

Arabidopsis Description

NAP1;2Nucleosome assembly protein 1;2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.