Factsheet for Solyc03g121700.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006378	Potato	nucleus	63.71	94.42
VIT_09s0002g02330.t01	Wine grape	nucleus	80.38	78.48
VIT_11s0016g02050.t01	Wine grape	nucleus	77.42	74.61
Os05t0539700-01	Rice	nucleus	71.77	73.35
GSMUA_Achr7P09020_001	Banana	nucleus	72.58	72.78
Solyc12g008940.1.1	Tomato	nucleus	72.04	71.66
GSMUA_Achr6P00890_001	Banana	nucleus	70.43	70.81
TraesCS1B01G377000.1	Wheat	nucleus	68.28	70.75
KXG22431	Sorghum	nucleus	70.43	70.05
TraesCS1D01G364900.1	Wheat	nucleus	68.55	69.67
OQU75826	Sorghum	nucleus	71.24	69.55
Zm00001d045352_P002	Maize	extracellular, mitochondrion	70.7	69.21
Zm00001d038851_P001	Maize	extracellular, mitochondrion	68.82	69.19
Os01t0711800-00	Rice	nucleus	55.11	69.02
Os06t0611700-00	Rice	nucleus	48.39	68.44
Solyc05g018810.2.1	Tomato	nucleus	68.82	68.09
TraesCS7D01G096300.1	Wheat	nucleus	69.89	68.06
Os06t0149400-01	Rice	nucleus	69.09	67.99
TraesCS4A01G401100.1	Wheat	nucleus	69.62	67.8
Zm00001d036177_P001	Maize	nucleus	66.67	67.57
TraesCS7A01G102400.1	Wheat	nucleus	69.09	67.1
HORVU1Hr1G048890.1	Barley	nucleus	34.14	66.84
GSMUA_Achr2P16760_001	Banana	mitochondrion, nucleus	72.58	66.5
Solyc06g062690.2.1	Tomato	nucleus	62.1	66.19
GSMUA_AchrUn_...	Banana	nucleus	62.37	65.72
TraesCS1A01G360500.1	Wheat	nucleus	68.55	64.23
GSMUA_Achr10P...	Banana	endoplasmic reticulum	72.58	63.53
HORVU7Hr1G111180.1	Barley	cytosol	7.53	59.57
Solyc08g063000.2.1	Tomato	nucleus	55.38	58.52
HORVU1Hr1G080060.11	Barley	nucleus, plastid	64.78	58.5
Os05t0235600-00	Rice	nucleus	19.09	56.8
HORVU7Hr1G064820.1	Barley	nucleus	12.63	55.29
HORVU7Hr1G064790.1	Barley	nucleus	12.63	55.29
HORVU2Hr1G066940.1	Barley	nucleus	11.83	53.01
Zm00001d011130_P002	Maize	nucleus	58.06	51.06
TraesCS3A01G357000.1	Wheat	mitochondrion	31.18	46.96
HORVU4Hr1G081230.2	Barley	nucleus	12.9	46.15
Solyc06g069890.2.1	Tomato	nucleus	21.77	31.03
Solyc12g077670.1.1	Tomato	cytosol	6.99	28.26
Solyc02g067370.2.1	Tomato	nucleus	19.09	27.95
Solyc03g116170.2.1	Tomato	cytosol	17.74	26.09
HORVU2Hr1G033000.1	Barley	cytosol	14.25	21.81
Solyc12g077660.1.1	Tomato	cytosol	3.49	20.63
Solyc02g021350.2.1	Tomato	cytosol	16.13	18.87

Protein Annotations

EnsemblPlants:Solyc03g121700.2.1	EnsemblPlantsGene:Solyc03g121700.2	Gene3D:3.30.1120.90	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:NAP-like_sf
InterPro:NAP_family	ncoils:Coil	PANTHER:PTHR11875	PANTHER:PTHR11875:SF98	PFAM:PF00956	SEG:seg
SUPFAM:SSF143113	UniParc:UPI00027655AC	UniProt:K4BMW9	MapMan:12.2.6	:	:

Description

No Description!

Coordinates

chr3:-:69781452..69785542

Molecular Weight (calculated)

42400.7 Da

IEP (calculated)

4.084

GRAVY (calculated)

-0.984

Length

372 amino acids

Sequence
(BLAST)

001: MSNNSNKDQF DMSDLGGSLP AAAAALSAED RAGLVNALKD KLQNLAGKHM DILETLTPPV RKRVDVLREL QSQHDELEAK FFEERAALEA KYQKLYEPLY
101: SKRYEIVNGV VEVEGVDEAP MIQGDDNETE NVPEKGVPNF WLTAMKTNEI LAEEISERDE EALKYLKDIK WCKLDDRKGF KLEFFFDTNP FFKNSVLTKT
201: YHMIDDDDDP ILEKAIGTNI EWYPGKCLTQ KILKRKPKKG SKNAKPVIKT ESCESFFNFF NPPQVPEDDD DIDEDAAEDL QNLMEQDYDI GSTIRDKVIP
301: HAVSWFTGEA AEGDEFEDIE GDDDDEDEED EEEDDDEDDE DEEEEKSKKK KSGKAQAGEG QQGERPPECK QQ

Best Arabidopsis Sequence Match ( AT2G19480.3 )
(BLAST)

001: MSNDKDSMNM SDLSTALNEE DRAGLVNALK NKLQNLAGQH SDVLENLTPP VRKRVEFLRE IQNQYDEMEA KFFEERAALE AKYQKLYQPL YTKRYEIVNG
101: VVEVEGAAEE VKSEQGEDKS AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY FKNTVLTKTY HMIDEDEPIL
201: EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE
301: ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KAGRSQLAEG QAGERPPECK QQ

Arabidopsis Description

NAP1;2Nucleosome assembly protein 1;2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.