Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400012517 | Potato | nucleus | 90.26 | 90.26 |
| Solyc03g121700.2.1 | Tomato | nucleus | 66.19 | 62.1 |
| VIT_09s0002g02330.t01 | Wine grape | nucleus | 60.74 | 55.64 |
| KRH23302 | Soybean | nucleus | 53.01 | 55.56 |
| KRH10020 | Soybean | nucleus | 57.88 | 55.19 |
| CDX97517 | Canola | nucleus | 42.98 | 54.35 |
| CDY23642 | Canola | nucleus | 45.27 | 53.74 |
| Bra027399.1-P | Field mustard | nucleus | 41.83 | 52.9 |
| VIT_11s0016g02050.t01 | Wine grape | nucleus | 58.17 | 52.59 |
| Solyc12g008940.1.1 | Tomato | nucleus | 56.16 | 52.41 |
| Solyc05g018810.2.1 | Tomato | nucleus | 56.16 | 52.13 |
| Solyc08g063000.2.1 | Tomato | nucleus | 49.57 | 49.15 |
| AT3G13782.2 | Thale cress | cytosol | 44.13 | 48.58 |
| Solyc06g069890.2.1 | Tomato | nucleus | 21.2 | 28.35 |
| Solyc12g077670.1.1 | Tomato | cytosol | 7.45 | 28.26 |
| Solyc02g067370.2.1 | Tomato | nucleus | 18.91 | 25.98 |
| Solyc03g116170.2.1 | Tomato | cytosol | 16.91 | 23.32 |
| Solyc12g077660.1.1 | Tomato | cytosol | 3.72 | 20.63 |
| Solyc02g021350.2.1 | Tomato | cytosol | 17.77 | 19.5 |
Protein Annotations
| EnsemblPlants:Solyc06g062690.2.1 | EnsemblPlantsGene:Solyc06g062690.2 | Gene3D:3.30.1120.90 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006334 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | InterPro:NAP-like_sf |
| InterPro:NAP_family | ncoils:Coil | PANTHER:PTHR11875 | PANTHER:PTHR11875:SF98 | PFAM:PF00956 | SEG:seg |
| SUPFAM:SSF143113 | UniParc:UPI000276694E | UniProt:K4C700 | MapMan:12.2.6 | : | : |
Description
Nucleosome assembly protein 1;4 [Source:Projected from Arabidopsis thaliana (AT3G13782) UniProtKB/Swiss-Prot;Acc:F4JEI8]
Coordinates
chr6:-:39568637..39572680
Molecular Weight (calculated)
39776.5 Da
IEP (calculated)
4.080
GRAVY (calculated)
-0.531
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MSISIKDRSD SDLLPAAAAA LSAEDRALLV NALKNKLQNL AMEDADILTT LSPQVRKRVD ALRELQGQHD ELQAKFLEES AALETKYQKL YEPLYTKRYE
101: IVNGIVEVEG VNVAPLEQGD NQGTGDGTEK GVPNFWLNAM LNNEILAEEI SEYDEEALEF LKDIKWCRVN DAKGFKLEFF FDTNPFFKNS VLTKTYLMVD
201: DELPVLDKAI GTDIEWYPGK CLTQKSFKKM QKNGLENVEP VIQVEDYESF FEFFKPPQVP EVDVGFDILD NSLEQLQYQM EHDYEIGSII RVKVIPHAVA
301: LFTGELGEDE DYEVTEYDDE EEKYEKKSNG AQTEEGQQGV HVQQIAEQE
101: IVNGIVEVEG VNVAPLEQGD NQGTGDGTEK GVPNFWLNAM LNNEILAEEI SEYDEEALEF LKDIKWCRVN DAKGFKLEFF FDTNPFFKNS VLTKTYLMVD
201: DELPVLDKAI GTDIEWYPGK CLTQKSFKKM QKNGLENVEP VIQVEDYESF FEFFKPPQVP EVDVGFDILD NSLEQLQYQM EHDYEIGSII RVKVIPHAVA
301: LFTGELGEDE DYEVTEYDDE EEKYEKKSNG AQTEEGQQGV HVQQIAEQE
001: MSNDKDSMNM SDLSTALNEE DRAGLVNALK NKLQNLAGQH SDVLENLTPP VRKRVEFLRE IQNQYDEMEA KFFEERAALE AKYQKLYQPL YTKRYEIVNG
101: VVEVEGAAEE VKSEQGEDKS AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY FKNTVLTKTY HMIDEDEPIL
201: EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE
301: ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KSSAGHKKAG RSQLAEGQAG ERPPECKQQ
101: VVEVEGAAEE VKSEQGEDKS AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY FKNTVLTKTY HMIDEDEPIL
201: EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE
301: ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KSSAGHKKAG RSQLAEGQAG ERPPECKQQ
Arabidopsis Description
NAP1;2Nucleosome assembly protein 1;2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUP3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.