Factsheet for PGSC0003DMT400012517

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g062690.2.1	Tomato	nucleus	90.26	90.26
VIT_09s0002g02330.t01	Wine grape	nucleus	64.47	59.06
KRH23302	Soybean	nucleus	55.87	58.56
KRH10020	Soybean	nucleus	61.03	58.2
PGSC0003DMT400006378	Potato	nucleus	41.83	58.17
VIT_11s0016g02050.t01	Wine grape	nucleus	62.18	56.22
PGSC0003DMT400055114	Potato	nucleus	59.6	55.62
PGSC0003DMT400000751	Potato	nucleus	58.45	55.14
CDX97517	Canola	nucleus	43.27	54.71
CDY23642	Canola	nucleus	45.56	54.08
Bra027399.1-P	Field mustard	nucleus	42.12	53.26
PGSC0003DMT400021185	Potato	nucleus	49.0	52.29
AT3G13782.2	Thale cress	cytosol	45.27	49.84
PGSC0003DMT400083149	Potato	cytosol	21.2	28.35
PGSC0003DMT400056432	Potato	cytosol	16.91	28.23
PGSC0003DMT400017852	Potato	cytosol	18.34	25.1
PGSC0003DMT400050243	Potato	nucleus	16.05	19.72
PGSC0003DMT400037682	Potato	nucleus	14.33	17.61

Protein Annotations

EntrezGene:102587956	MapMan:12.2.6	Gene3D:3.30.1120.90	ncoils:Coil	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
UniProt:M1A1C2	InterPro:NAP-like_sf	InterPro:NAP_family	PFAM:PF00956	EnsemblPlantsGene:PGSC0003DMG402004883	PGSC:PGSC0003DMG402004883
EnsemblPlants:PGSC0003DMT400012517	PANTHER:PTHR11875	PANTHER:PTHR11875:SF98	SUPFAM:SSF143113	UniParc:UPI000295A672	RefSeq:XP_006357383.1
SEG:seg	:	:	:	:	:

Description

Nucleosome assembly protein 1 4 [Source:PGSC_GENE;Acc:PGSC0003DMG402004883]

Coordinates

chr6:+:48693837..48697978

Molecular Weight (calculated)

39865.0 Da

IEP (calculated)

4.305

GRAVY (calculated)

-0.559

Length

349 amino acids

Sequence
(BLAST)

001: MSISIKDHSD SDLLPAAAAA LSAEDRAILV NALKNKLQNL AMEDSDILTR LSPQVRKRVD ALRELQGQHD ELQAKFLEES AALETKYQKL YEPLYTKRYE
101: IVNGIVEVEG VNVAPVDQGD NKGTGDGTEK GVPNFWLNAM LNNEILAEEI SEYDEGALEF LKDIKWCRVN DPKGFKLEFF FDTNPFFKNS VLTKTYLMVD
201: DELPILEKAI GTEIEWYPGK CLTRKIFKKK QKNGLNNVKP EIKVEDYESF FNFFKPPQVP EDDVGFDILN DALEQLQNQM EHDYEIGSII RVKVIPHAVA
301: LFTGELGENE DYEATEYDDE EEKHEKKCNR AQTEEGQQVV NVLMIAEQE

Best Arabidopsis Sequence Match ( AT2G19480.3 )
(BLAST)

001: MSNDKDSMNM SDLSTALNEE DRAGLVNALK NKLQNLAGQH SDVLENLTPP VRKRVEFLRE IQNQYDEMEA KFFEERAALE AKYQKLYQPL YTKRYEIVNG
101: VVEVEGAAEE VKSEQGEDKS AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY FKNTVLTKTY HMIDEDEPIL
201: EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE
301: ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KAGRSQLAEG QAGERPPECK QQ

Arabidopsis Description

NAP1;2Nucleosome assembly protein 1;2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.