Factsheet for PGSC0003DMT400050243

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400070782

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G18800.1	PGSC0003DMT400070782	AT5G09320.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g116170.2.1	Tomato	cytosol	79.58	89.33
KRH16731	Soybean	cytosol, mitochondrion, nucleus	21.13	68.97
KRH65521	Soybean	cytosol	23.59	67.0
PGSC0003DMT400083149	Potato	cytosol	61.27	66.67
Bra016541.1-P	Field mustard	cytosol	52.46	63.68
KRH75776	Soybean	cytosol	20.07	60.0
KRH65520	Soybean	nucleus	23.24	60.0
CDX83813	Canola	cytosol	53.17	59.68
CDX96698	Canola	cytosol	52.46	58.89
KRH54545	Soybean	nucleus	54.58	58.71
KRH63352	Soybean	nucleus	53.87	58.4
AT1G18800.1	Thale cress	cytosol	52.11	57.81
VIT_17s0000g06030.t01	Wine grape	cytosol	51.06	54.1
KRH03467	Soybean	nucleus	48.24	53.1
CDY19242	Canola	cytosol	48.24	52.9
KRH56918	Soybean	nucleus	46.83	51.95
Bra025687.1-P	Field mustard	cytosol	42.61	51.93
PGSC0003DMT400017852	Potato	cytosol	46.48	51.76
AT1G74560.3	Thale cress	cytosol	47.89	51.52
CDY26724	Canola	cytosol	45.42	50.99
PGSC0003DMT400056432	Potato	cytosol	37.32	50.72
KRH49525	Soybean	cytosol	23.24	40.24
PGSC0003DMT400037682	Potato	nucleus	33.45	33.45
PGSC0003DMT400055114	Potato	nucleus	24.65	18.72
PGSC0003DMT400000751	Potato	nucleus	23.94	18.38
PGSC0003DMT400006378	Potato	nucleus	15.85	17.93
PGSC0003DMT400012517	Potato	nucleus	19.72	16.05
PGSC0003DMT400021185	Potato	nucleus	17.96	15.6

Protein Annotations

EnsemblPlants:PGSC0003DMT400050243	EnsemblPlantsGene:PGSC0003DMG400019515	EntrezGene:102603143	Gene3D:3.30.1120.90	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
InterPro:NAP-like_sf	InterPro:NAP_family	PANTHER:PTHR11875	PANTHER:PTHR11875:SF60	PFAM:PF00956	PGSC:PGSC0003DMG400019515
SEG:seg	SUPFAM:SSF143113	UniParc:UPI00029676D6	UniProt:M1BQ00	MapMan:12.2.8	:

Description

SET protein, phospatase 2A inhibitor [Source:PGSC_GENE;Acc:PGSC0003DMG400019515]

Coordinates

chr3:+:55936850..55943295

Molecular Weight (calculated)

32365.0 Da

IEP (calculated)

4.049

GRAVY (calculated)

-0.752

Length

284 amino acids

Sequence
(BLAST)

001: MGAEAKKQKM AEEEIGIDGK LVVSVEKLQE IQDELEKFTG SGSCFATKLT IGCKEDISCV SVVFLRAWRA SLRFESTSPY DTWLDAIEIN EKASDEVLEI
101: EQKYSHVRRP VYDRRNDIIK AIPDFWLTAF LSHPVLGELL TEEDHKIFKF LSSVEVEDSK DVKSGYTITF NFNSNPYFEN TKLSKNYTFL EDGPTKITAS
201: TIQWTEGRGI PNGVAHEKKG NKRSLAEESF FSWFSEVNQK DDGEDDEDVF LEIQDEDPDE EDLEEDEGGD EEKDSEGSDE DDDE

Best Arabidopsis Sequence Match ( AT1G18800.1 )
(BLAST)

001: MVTDKSKKAK TEEENVEQID AELVLSIEKL QEIQDDLEKI NEKASDEVLE VEQKYNVIRK PVYDKRNEII KTIPDFWLTA FLSHPALGEL LTEEDQKIFK
101: YLSSLDVEDA KDVKSGYSIT FSFNPNPFFE DGKLTKTFTF LEEGTTKITA TPIKWKEGKG LANGVNHEKN GNKRALPEES FFTWFSDAQH KEDVEDEMQD
201: EQVADIIKED LWPNPLTYFN NDADEEDFDG DDDGDEEEKE GDSDEDDDEE DEVGEE

Arabidopsis Description

NRP2NRP2 [Source:UniProtKB/TrEMBL;Acc:A0A178W8U0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.