Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G18800.1 | CDX69912 | AT5G09320.1 | 21798944 |
| AT1G18800.1 | CDY21574 | AT5G09320.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016541.1-P | Field mustard | cytosol | 92.49 | 100.0 |
| CDX83813 | Canola | cytosol | 99.21 | 99.21 |
| AT1G18800.1 | Thale cress | cytosol | 89.72 | 88.67 |
| KRH65521 | Soybean | cytosol | 32.81 | 83.0 |
| CDY26724 | Canola | cytosol | 78.26 | 78.26 |
| CDY19242 | Canola | cytosol | 77.87 | 76.06 |
| KRH16731 | Soybean | cytosol, mitochondrion, nucleus | 25.69 | 74.71 |
| Solyc12g077660.1.1 | Tomato | cytosol | 18.58 | 74.6 |
| KRH65520 | Soybean | nucleus | 32.02 | 73.64 |
| KRH75776 | Soybean | cytosol | 27.27 | 72.63 |
| KRH63352 | Soybean | nucleus | 75.1 | 72.52 |
| KRH03467 | Soybean | nucleus | 73.91 | 72.48 |
| KRH54545 | Soybean | nucleus | 75.1 | 71.97 |
| KRH56918 | Soybean | nucleus | 71.94 | 71.09 |
| VIT_17s0000g06030.t01 | Wine grape | cytosol | 72.73 | 68.66 |
| Solyc06g069890.2.1 | Tomato | nucleus | 69.17 | 67.05 |
| PGSC0003DMT400083149 | Potato | cytosol | 68.77 | 66.67 |
| GSMUA_Achr10P... | Banana | nucleus | 67.59 | 66.54 |
| TraesCS6B01G227700.1 | Wheat | nucleus | 65.61 | 66.14 |
| HORVU6Hr1G051930.1 | Barley | nucleus | 66.01 | 66.01 |
| TraesCS6D01G185800.1 | Wheat | golgi | 65.22 | 65.74 |
| TraesCS6A01G202200.1 | Wheat | nucleus | 65.22 | 65.74 |
| Solyc12g077670.1.1 | Tomato | cytosol | 23.72 | 65.22 |
| Solyc03g116170.2.1 | Tomato | cytosol | 65.22 | 65.22 |
| GSMUA_Achr6P10690_001 | Banana | nucleus | 65.22 | 64.71 |
| EES07035 | Sorghum | cytosol | 64.03 | 64.54 |
| GSMUA_Achr4P00490_001 | Banana | cytosol | 64.82 | 64.06 |
| Os02t0576700-01 | Rice | extracellular | 63.64 | 63.89 |
| Zm00001d050874_P001 | Maize | extracellular | 62.85 | 63.35 |
| GSMUA_Achr7P21000_001 | Banana | cytosol | 62.45 | 62.7 |
| Zm00001d016935_P001 | Maize | extracellular | 63.64 | 62.4 |
| TraesCS2D01G323500.1 | Wheat | cytosol | 58.5 | 58.5 |
| TraesCS2A01G344900.1 | Wheat | cytosol | 58.5 | 58.5 |
| TraesCS2B01G342400.1 | Wheat | cytosol | 58.1 | 58.1 |
| KRH49525 | Soybean | cytosol | 36.76 | 56.71 |
| Os04t0459700-02 | Rice | nucleus | 56.52 | 55.21 |
| EES12291 | Sorghum | cytosol | 55.73 | 54.86 |
| PGSC0003DMT400050243 | Potato | nucleus | 58.89 | 52.46 |
| CDX97517 | Canola | nucleus | 27.67 | 25.36 |
| CDY23642 | Canola | nucleus | 26.88 | 23.13 |
| CDY65997 | Canola | nucleus | 7.51 | 22.35 |
| CDX89363 | Canola | nucleus | 31.23 | 21.58 |
| CDX94372 | Canola | nucleus | 30.43 | 20.98 |
| CDY60738 | Canola | nucleus | 31.62 | 20.94 |
| CDY21663 | Canola | nucleus | 28.85 | 20.92 |
| CDY50468 | Canola | nucleus | 30.83 | 20.63 |
| CDX82688 | Canola | nucleus | 30.83 | 20.53 |
| CDY50472 | Canola | nucleus | 30.04 | 20.32 |
| CDY69405 | Canola | nucleus | 28.85 | 19.62 |
| CDY67089 | Canola | nucleus | 28.85 | 19.47 |
| CDY50005 | Canola | nucleus | 26.88 | 19.37 |
| CDY50473 | Canola | nucleus | 13.44 | 18.09 |
| CDY52429 | Canola | nucleus | 10.67 | 9.12 |
Protein Annotations
| MapMan:12.2.8 | Gene3D:3.30.1120.90 | GO:A0A078EBE6 | EnsemblPlants:CDX96698 | ProteinID:CDX96698 | ProteinID:CDX96698.1 |
| ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006334 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | EnsemblPlantsGene:GSBRNA2T00102912001 | InterPro:NAP-like_sf | InterPro:NAP_family |
| PFAM:PF00956 | PANTHER:PTHR11875 | PANTHER:PTHR11875:SF60 | SUPFAM:SSF143113 | UniParc:UPI0004EE66B8 | SEG:seg |
Description
BnaA08g22410D
Coordinates
chrLK031895:+:628045..630214
Molecular Weight (calculated)
28847.7 Da
IEP (calculated)
3.933
GRAVY (calculated)
-0.928
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGDKSKKAK TDEENVEQID GELVLSIEKL QAIQDDLEKI NEKASDEVLE VEQKYNGIRK PVYDKRGDII KAIPDFWLTA FLSHPALGEL LTEEDQKIFK
101: YLSSLEVEDA KDVKSGYSIT FNFNPNPYFE DGKLTKTFTF LEEGTTKITA TPIKWKEGKG LSNGVDHEKN GNKRALPEES FFTWFSDAQH KEEDVEVEIH
201: DEVADIIKED LWANPLTYFN NEADEEDFDD EDDEGEEGDS DEDDDAEGED GEE
101: YLSSLEVEDA KDVKSGYSIT FNFNPNPYFE DGKLTKTFTF LEEGTTKITA TPIKWKEGKG LSNGVDHEKN GNKRALPEES FFTWFSDAQH KEEDVEVEIH
201: DEVADIIKED LWANPLTYFN NEADEEDFDD EDDEGEEGDS DEDDDAEGED GEE
001: MVTDKSKKAK TEEENVEQID AELVLSIEKL QEIQDDLEKI NEKASDEVLE VEQKYNVIRK PVYDKRNEII KTIPDFWLTA FLSHPALGEL LTEEDQKIFK
101: YLSSLDVEDA KDVKSGYSIT FSFNPNPFFE DGKLTKTFTF LEEGTTKITA TPIKWKEGKG LANGVNHEKN GNKRALPEES FFTWFSDAQH KEDVEDEMQD
201: EQVADIIKED LWPNPLTYFN NDADEEDFDG DDDGDEEEKE GDSDEDDDEE DEVGEE
101: YLSSLDVEDA KDVKSGYSIT FSFNPNPFFE DGKLTKTFTF LEEGTTKITA TPIKWKEGKG LANGVNHEKN GNKRALPEES FFTWFSDAQH KEDVEDEMQD
201: EQVADIIKED LWPNPLTYFN NDADEEDFDG DDDGDEEEKE GDSDEDDDEE DEVGEE
Arabidopsis Description
NRP2NRP2 [Source:UniProtKB/TrEMBL;Acc:A0A178W8U0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.