Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65997 | Canola | nucleus | 20.27 | 70.59 |
| CDY50473 | Canola | nucleus | 26.35 | 41.49 |
| CDY50005 | Canola | nucleus | 44.93 | 37.89 |
| AT4G26110.1 | Thale cress | nucleus | 44.93 | 35.75 |
| CDY50468 | Canola | nucleus | 44.26 | 34.66 |
| CDX94372 | Canola | nucleus | 42.57 | 34.33 |
| CDX89363 | Canola | nucleus | 42.23 | 34.15 |
| CDY50472 | Canola | nucleus | 42.91 | 33.96 |
| Solyc05g018810.2.1 | Tomato | nucleus | 40.54 | 31.91 |
| PGSC0003DMT400055114 | Potato | nucleus | 40.2 | 31.82 |
| CDY21663 | Canola | nucleus | 37.5 | 31.81 |
| VIT_11s0016g02050.t01 | Wine grape | nucleus | 40.88 | 31.35 |
| VIT_09s0002g02330.t01 | Wine grape | nucleus | 40.2 | 31.23 |
| Solyc12g008940.1.1 | Tomato | nucleus | 39.19 | 31.02 |
| CDY69405 | Canola | nucleus | 38.51 | 30.65 |
| PGSC0003DMT400000751 | Potato | nucleus | 38.18 | 30.54 |
| CDY67089 | Canola | nucleus | 38.51 | 30.4 |
| KRH37411 | Soybean | nucleus | 37.16 | 30.14 |
| KRH19202 | Soybean | nucleus | 38.18 | 30.13 |
| KRH02690 | Soybean | nucleus | 38.51 | 30.08 |
| CDY60738 | Canola | nucleus | 38.51 | 29.84 |
| CDX82688 | Canola | nucleus | 38.18 | 29.74 |
| KRH12415 | Soybean | endoplasmic reticulum | 35.81 | 29.2 |
| CDY23642 | Canola | nucleus | 28.04 | 28.23 |
| CDX97517 | Canola | nucleus | 25.34 | 27.17 |
| CDY19242 | Canola | cytosol | 9.46 | 10.81 |
| CDX96698 | Canola | cytosol | 9.12 | 10.67 |
| CDX83813 | Canola | cytosol | 9.12 | 10.67 |
| CDY26724 | Canola | cytosol | 8.45 | 9.88 |
Protein Annotations
| EnsemblPlants:CDY52429 | EnsemblPlantsGene:GSBRNA2T00006966001 | GO:A0A078ISJ3 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006334 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | InterPro:NAP-like_sf |
| InterPro:NAP_family | PANTHER:PTHR11875 | PANTHER:PTHR11875:SF101 | PFAM:PF00956 | ProteinID:CDY52429 | ProteinID:CDY52429.1 |
| SEG:seg | SUPFAM:SSF143113 | UniParc:UPI0004EEBABF | UniProt:A0A078ISJ3 | MapMan:35.1 | : |
Description
BnaC03g72530DBnaC03g72530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ISJ3]
Coordinates
chrLK033086:-:35831..39199
Molecular Weight (calculated)
34532.2 Da
IEP (calculated)
8.011
GRAVY (calculated)
-0.795
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MNKPHPRKGK NNRGLGRRVN RAEEQREPQI ELTGKIPVKN RRQHQESIRV SSSLQGLRIP KKLPHSTQVS LTADDSKLWC LYVFFVMCNP QNNLQNLAGQ
101: LSDVLENLSP ISQHDELEAK FREERAVLEA KYEKLYQPIY AKLTQEDTKM DEGEDKTAQE RGVLSFWLTA LQNNDVTSHE VTMHDEEALR TEIDWYPAKC
201: VTQKILKKKP KKDEDIDEDR ELQNLMEQDY EIGFTIRDKI ILHAVHGLLV RLWKDMSLTW SSVVWLKKRI PNARFHCMAG NERSNADSRW NDIVGF
101: LSDVLENLSP ISQHDELEAK FREERAVLEA KYEKLYQPIY AKLTQEDTKM DEGEDKTAQE RGVLSFWLTA LQNNDVTSHE VTMHDEEALR TEIDWYPAKC
201: VTQKILKKKP KKDEDIDEDR ELQNLMEQDY EIGFTIRDKI ILHAVHGLLV RLWKDMSLTW SSVVWLKKRI PNARFHCMAG NERSNADSRW NDIVGF
001: MSNDKDSFNV SDLTAALKDE DRAGLVNALK NKLQNLAGQR SDVLENLTPN VRKRVDALRD IQSQHDELEA KFREERAILE AKYQTLYQPL YVKRYEIVNG
101: TTEVELAPED DTKVDQGEEK TAEEKGVPSF WLTALKNNDV ISEEVTERDE GALKYLKDIK WCKIEEPKGF KLEFFFDTNP YFKNTVLTKS YHMIDEDEPL
201: LEKAMGTEID WYPGKCLTQK ILKKKPKKGS KNTKPITKLE DCESFFNFFS PPEVPDEDED IDEERAEDLQ NLMEQDYDIG STIREKIIPR AVSWFTGEAM
301: EAEDFEIDDD EEDDIDEDED EEDEEDEEDD DDEDEEESKT KKKPSIGNKK GGRSQIVGEG KQDERPPECK QQ
101: TTEVELAPED DTKVDQGEEK TAEEKGVPSF WLTALKNNDV ISEEVTERDE GALKYLKDIK WCKIEEPKGF KLEFFFDTNP YFKNTVLTKS YHMIDEDEPL
201: LEKAMGTEID WYPGKCLTQK ILKKKPKKGS KNTKPITKLE DCESFFNFFS PPEVPDEDED IDEERAEDLQ NLMEQDYDIG STIREKIIPR AVSWFTGEAM
301: EAEDFEIDDD EEDDIDEDED EEDEEDEEDD DDEDEEESKT KKKPSIGNKK GGRSQIVGEG KQDERPPECK QQ
Arabidopsis Description
NAP1;1Nucleosome assembly protein 1;1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZI2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.