Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80568 | Canola | nucleus | 53.52 | 84.44 |
| CDY05521 | Canola | nucleus | 34.74 | 64.35 |
| Bra009906.1-P | Field mustard | nucleus | 94.37 | 60.18 |
| CDY69060 | Canola | nucleus | 33.8 | 60.0 |
| AT5G26720.1 | Thale cress | nucleus | 30.99 | 49.25 |
Protein Annotations
| EnsemblPlants:CDY61114 | EnsemblPlantsGene:GSBRNA2T00030596001 | Gene3D:1.20.1050.130 | PANTHER:PTHR35123 | PANTHER:PTHR35123:SF2 | ProteinID:CDY61114 |
| ProteinID:CDY61114.1 | SEG:seg | UniParc:UPI0004EDF3FA | UniProt:A0A078JAU4 | MapMan:35.1 | : |
Description
BnaA06g39470DBnaA06g39470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAU4]
Coordinates
chrLK033957:+:27499..30072
Molecular Weight (calculated)
23909.1 Da
IEP (calculated)
8.606
GRAVY (calculated)
-0.708
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGSRGEITV GEHNGVDNDH KRRKKEEDGI ESENQLVMPS ISKPRKRFID KFRKRPKSPK RSSSSSRSGS GKGGCFSLRR RRRRTEEEEG SPSSTVSDPN
101: DECFTHEMMR VMLETNDFCS NECNPHRRKL SGTSVLLRYV GRSATSLPGF YGSDAFESSQ IDEWVDYATV FSSGSEFENA CTRVDTTLRV VLTFSLAILC
201: PLQTLLSGQL LLV
101: DECFTHEMMR VMLETNDFCS NECNPHRRKL SGTSVLLRYV GRSATSLPGF YGSDAFESSQ IDEWVDYATV FSSGSEFENA CTRVDTTLRV VLTFSLAILC
201: PLQTLLSGQL LLV
001: MPGNHSEISL NEQNRVDDND TKTKTTTRKK KKKKDVTIVD DDDNQFDTTN QLVKSKNRFL GKFRKKPKSP KRWSGSRKGG CFRVMRPRRR EGGDDDSSVS
101: SPVSDPNDER FSHEMLRVML ETNDFCSDEC NPHR
101: SPVSDPNDER FSHEMLRVML ETNDFCSDEC NPHR
Arabidopsis Description
Ubiquitin carboxyl-terminal hydrolase-like protein [Source:UniProtKB/TrEMBL;Acc:Q8GXF7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.