Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69060 | Canola | nucleus | 47.01 | 52.5 |
| Bra020530.1-P | Field mustard | nucleus | 44.78 | 52.17 |
| CDY05521 | Canola | nucleus | 44.78 | 52.17 |
| CDX80568 | Canola | nucleus | 50.75 | 50.37 |
| CDY61114 | Canola | nucleus | 49.25 | 30.99 |
| Bra009906.1-P | Field mustard | nucleus | 50.75 | 20.36 |
Protein Annotations
| MapMan:35.2 | EntrezGene:832717 | ProteinID:AED93572.1 | EMBL:AK118263 | ArrayExpress:AT5G26720 | EnsemblPlantsGene:AT5G26720 |
| RefSeq:AT5G26720 | TAIR:AT5G26720 | RefSeq:AT5G26720-TAIR-G | EnsemblPlants:AT5G26720.1 | TAIR:AT5G26720.1 | EMBL:BT004927 |
| GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009856 |
| GO:GO:0009860 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0016787 | GO:GO:0030154 |
| GO:GO:0040007 | RefSeq:NP_850873.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR35123 |
| PANTHER:PTHR35123:SF2 | UniProt:Q8GXF7 | UniParc:UPI000000C50B | SEG:seg | : | : |
Description
Ubiquitin carboxyl-terminal hydrolase-like protein [Source:UniProtKB/TrEMBL;Acc:Q8GXF7]
Coordinates
chr5:+:9303939..9304838
Molecular Weight (calculated)
15548.1 Da
IEP (calculated)
10.168
GRAVY (calculated)
-1.486
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGNHSEISL NEQNRVDDND TKTKTTTRKK KKKKDVTIVD DDDNQFDTTN QLVKSKNRFL GKFRKKPKSP KRWSGSRKGG CFRVMRPRRR EGGDDDSSVS
101: SPVSDPNDER FSHEMLRVML ETNDFCSDEC NPHR
101: SPVSDPNDER FSHEMLRVML ETNDFCSDEC NPHR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.