Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05521 | Canola | nucleus | 59.26 | 69.57 |
| CDY69060 | Canola | nucleus | 58.52 | 65.83 |
| CDY61114 | Canola | nucleus | 84.44 | 53.52 |
| AT5G26720.1 | Thale cress | nucleus | 50.37 | 50.75 |
Protein Annotations
| EnsemblPlants:CDX80568 | EnsemblPlantsGene:GSBRNA2T00133690001 | PANTHER:PTHR35123 | PANTHER:PTHR35123:SF2 | ProteinID:CDX80568 | ProteinID:CDX80568.1 |
| SEG:seg | UniParc:UPI0004EF3535 | MapMan:35.2 | : | : | : |
Description
BnaC07g28760D
Coordinates
chrLK031821:+:1380240..1380647
Molecular Weight (calculated)
15562.9 Da
IEP (calculated)
8.676
GRAVY (calculated)
-1.582
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGSRGEITV DDQNGVDNDH KRRRKKKEGE DGTETENQLV MPSISKPRKR FIDKFRKRPK SQNQSSSSSS SRSGSRKGGC FSLRRRRRRT EEEEEEEGSP
101: SSPVSDPNDE CFTHEMLRVM LETNDFCSNE CNPHR
101: SSPVSDPNDE CFTHEMLRVM LETNDFCSNE CNPHR
001: MPGNHSEISL NEQNRVDDND TKTKTTTRKK KKKKDVTIVD DDDNQFDTTN QLVKSKNRFL GKFRKKPKSP KRWSGSRKGG CFRVMRPRRR EGGDDDSSVS
101: SPVSDPNDER FSHEMLRVML ETNDFCSDEC NPHR
101: SPVSDPNDER FSHEMLRVML ETNDFCSDEC NPHR
Arabidopsis Description
Ubiquitin carboxyl-terminal hydrolase-like protein [Source:UniProtKB/TrEMBL;Acc:Q8GXF7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.