Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05521 | Canola | nucleus | 84.17 | 87.83 |
| CDX80568 | Canola | nucleus | 65.83 | 58.52 |
| AT5G26720.1 | Thale cress | nucleus | 52.5 | 47.01 |
| CDY61114 | Canola | nucleus | 60.0 | 33.8 |
Protein Annotations
| EnsemblPlants:CDY69060 | EnsemblPlantsGene:GSBRNA2T00082617001 | PANTHER:PTHR35123 | ProteinID:CDY69060 | ProteinID:CDY69060.1 | SEG:seg |
| UniParc:UPI0004EE54F5 | UniProt:A0A078JRK2 | MapMan:35.2 | : | : | : |
Description
BnaCnng61670DBnaCnng61670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JRK2]
Coordinates
chrLK038548:+:1602..1964
Molecular Weight (calculated)
13874.2 Da
IEP (calculated)
9.305
GRAVY (calculated)
-1.531
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGSHGEITV VEQNRVVNDN KKTRKNKKKK EKEEGDDVEN GNQLVTPPVS KHRKQFTDRF RKKHKSRSGS CKGGCFSVMR PRRTEEQEEE EGSPSSSAHD
101: MLRVMLENND YFSDECNPHR
101: MLRVMLENND YFSDECNPHR
001: MPGNHSEISL NEQNRVDDND TKTKTTTRKK KKKKDVTIVD DDDNQFDTTN QLVKSKNRFL GKFRKKPKSP KRWSGSRKGG CFRVMRPRRR EGGDDDSSVS
101: SPVSDPNDER FSHEMLRVML ETNDFCSDEC NPHR
101: SPVSDPNDER FSHEMLRVML ETNDFCSDEC NPHR
Arabidopsis Description
Ubiquitin carboxyl-terminal hydrolase-like protein [Source:UniProtKB/TrEMBL;Acc:Q8GXF7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.