CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P15810_001	Banana	cytosol	88.57	88.57
Bra039161.1-P	Field mustard	cytosol	100.0	68.63
AT3G02190.1	Thale cress	cytosol	97.14	66.67
Os02t0796900-00	Rice	cytosol	88.57	62.0
Os02t0797200-01	Rice	cytosol	88.57	60.78
Zm00001d045121_P001	Maize	cytosol	88.57	60.78
Zm00001d018383_P002	Maize	cytosol	88.57	60.78
Os06t0181566-01	Rice	plastid	88.57	60.78
KRH61699	Soybean	cytosol	88.57	60.78
KRH52367	Soybean	cytosol	88.57	60.78
KRH12895	Soybean	cytosol	88.57	60.78
EES05958	Sorghum	cytosol	88.57	60.78
KRH37867	Soybean	cytosol	88.57	60.78
TraesCS6A01G360400.1	Wheat	cytosol	85.71	58.82
TraesCS7D01G147000.1	Wheat	cytosol	85.71	58.82
TraesCS7A01G145700.1	Wheat	cytosol	85.71	58.82
TraesCS6D01G343900.1	Wheat	cytosol	85.71	58.82
TraesCS6B01G393300.1	Wheat	cytosol	85.71	58.82
Solyc07g005050.2.1	Tomato	cytosol	85.71	58.82
KRH52368	Soybean	cytosol	88.57	56.36
VIT_11s0149g00220.t01	Wine grape	mitochondrion	88.57	51.67
VIT_04s0008g06030.t01	Wine grape	cytosol	88.57	46.27
Zm00001d035838_P001	Maize	extracellular	88.57	43.06
GSMUA_Achr3P13390_001	Banana	cytosol	88.57	42.47
HORVU0Hr1G017360.1	Barley	mitochondrion	85.71	41.1
CDY62505	Canola	cytosol, plastid	91.43	41.03
VIT_11s0149g00240.t01	Wine grape	cytosol	85.71	38.46
Solyc12g010350.1.1	Tomato	nucleus, unclear	85.71	35.29
GSMUA_Achr7P19310_001	Banana	cytosol	88.57	34.83
Zm00001d052025_P001	Maize	mitochondrion	88.57	31.96
PGSC0003DMT400030914	Potato	cytosol, golgi, mitochondrion, vacuole	51.43	31.03
HORVU7Hr1G029860.1	Barley	plastid	85.71	24.39
OQU75968	Sorghum	cytosol	88.57	19.02

Protein Annotations

Gene3D:1.10.1620.10	MapMan:17.1.2.1.42	GO:A0A078HZE8	UniProt:A0A078HZE8	EnsemblPlants:CDY43252	ProteinID:CDY43252
ProteinID:CDY43252.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	EnsemblPlantsGene:GSBRNA2T00076283001
InterPro:IPR023626	PFAM:PD007914	PFAM:PF00832	ScanProsite:PS00051	PANTHER:PTHR19970	PANTHER:PTHR19970:SF13
InterPro:Ribosomal_L39	InterPro:Ribosomal_L39_CS	InterPro:Ribosomal_L39e_dom_sf	SUPFAM:SSF48662	UniParc:UPI0004EEEC20	:

Description

BnaC05g48450D60S ribosomal protein L39-2 [Source:Projected from Arabidopsis thaliana (AT3G02190) UniProtKB/Swiss-Prot;Acc:Q8L8W6]

Coordinates

chrLK032550:+:95639..96143

Molecular Weight (calculated)

4492.6 Da

IEP (calculated)

12.808

GRAVY (calculated)

-1.537

Length

35 amino acids

Sequence
(BLAST)

1: MRQNRPIPGW IRLRTDNKIR YNAKRRHWRR TKLGF

Best Arabidopsis Sequence Match ( AT3G02190.1 )
(BLAST)

1: MPSHKSFMIK KKLGKKMRQN RPIPNWIRLR TDNKIRYNAK RRHWRRTKLG F

Arabidopsis Description

RPL39B60S ribosomal protein L39-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8W6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.