Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43252 | Canola | cytosol | 68.63 | 100.0 |
| AT3G02190.1 | Thale cress | cytosol | 94.12 | 94.12 |
| GSMUA_Achr1P15810_001 | Banana | cytosol | 60.78 | 88.57 |
| KRH12895 | Soybean | cytosol | 88.24 | 88.24 |
| Os06t0181566-01 | Rice | plastid | 88.24 | 88.24 |
| Os02t0797200-01 | Rice | cytosol | 88.24 | 88.24 |
| KRH61699 | Soybean | cytosol | 88.24 | 88.24 |
| KRH52367 | Soybean | cytosol | 88.24 | 88.24 |
| KRH37867 | Soybean | cytosol | 88.24 | 88.24 |
| Zm00001d018383_P002 | Maize | cytosol | 88.24 | 88.24 |
| EES05958 | Sorghum | cytosol | 88.24 | 88.24 |
| Zm00001d045121_P001 | Maize | cytosol | 88.24 | 88.24 |
| Os02t0796900-00 | Rice | cytosol | 86.27 | 88.0 |
| Bra032033.1-P | Field mustard | cytosol | 86.27 | 84.62 |
| TraesCS7A01G145700.1 | Wheat | cytosol | 84.31 | 84.31 |
| TraesCS6D01G343900.1 | Wheat | cytosol | 84.31 | 84.31 |
| TraesCS7D01G147000.1 | Wheat | cytosol | 84.31 | 84.31 |
| TraesCS6B01G393300.1 | Wheat | cytosol | 84.31 | 84.31 |
| TraesCS6A01G360400.1 | Wheat | cytosol | 84.31 | 84.31 |
| Solyc07g005050.2.1 | Tomato | cytosol | 84.31 | 84.31 |
| KRH52368 | Soybean | cytosol | 86.27 | 80.0 |
| Bra023970.1-P | Field mustard | cytosol | 84.31 | 78.18 |
| VIT_11s0149g00220.t01 | Wine grape | mitochondrion | 88.24 | 75.0 |
| Bra040064.1-P | Field mustard | cytosol | 88.24 | 69.23 |
| VIT_04s0008g06030.t01 | Wine grape | cytosol | 88.24 | 67.16 |
| GSMUA_Achr3P13390_001 | Banana | cytosol | 88.24 | 61.64 |
| Zm00001d035838_P001 | Maize | extracellular | 86.27 | 61.11 |
| HORVU0Hr1G017360.1 | Barley | mitochondrion | 84.31 | 58.9 |
| VIT_11s0149g00240.t01 | Wine grape | cytosol | 86.27 | 56.41 |
| PGSC0003DMT400030914 | Potato | cytosol, golgi, mitochondrion, vacuole | 60.78 | 53.45 |
| Solyc12g010350.1.1 | Tomato | nucleus, unclear | 84.31 | 50.59 |
| GSMUA_Achr7P19310_001 | Banana | cytosol | 88.24 | 50.56 |
| Zm00001d052025_P001 | Maize | mitochondrion | 88.24 | 46.39 |
| HORVU7Hr1G029860.1 | Barley | plastid | 84.31 | 34.96 |
| OQU75968 | Sorghum | cytosol | 86.27 | 26.99 |
Protein Annotations
| Gene3D:1.10.1620.10 | MapMan:17.1.2.1.42 | EnsemblPlantsGene:Bra039161 | EnsemblPlants:Bra039161.1 | EnsemblPlants:Bra039161.1-P | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022625 | InterPro:IPR023626 | UniProt:M4FDJ0 | HAMAP:MF_00629 |
| PFAM:PD007914 | PFAM:PF00832 | ScanProsite:PS00051 | PANTHER:PTHR19970 | PANTHER:PTHR19970:SF13 | InterPro:Ribosomal_L39 |
| InterPro:Ribosomal_L39_CS | InterPro:Ribosomal_L39e_dom_sf | SUPFAM:SSF48662 | UniParc:UPI0002547650 | SEG:seg | : |
Description
AT3G02190 (E=3e-017) | 60S ribosomal protein L39 (RPL39B)
Coordinates
chrA05:+:23694866..23695201
Molecular Weight (calculated)
6359.1 Da
IEP (calculated)
12.820
GRAVY (calculated)
-1.302
Length
51 amino acids
Sequence
(BLAST)
(BLAST)
1: MPSHKTFIIK KKLGKKMRQN RPIPGWIRLR TDNKIRYNAK RRHWRRTKLG F
1: MPSHKSFMIK KKLGKKMRQN RPIPNWIRLR TDNKIRYNAK RRHWRRTKLG F
Arabidopsis Description
RPL39B60S ribosomal protein L39-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8W6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.