Factsheet for Bra032033.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002778.1-P
Bra013951.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25210.1	Bra013951.1-P	AT4G26110.1	21798944
AT2G25210.1	Bra002778.1-P	AT5G56950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G25210.1	Thale cress	cytosol	82.69	97.73
GSMUA_Achr1P15810_001	Banana	cytosol	65.38	97.14
Solyc07g005050.2.1	Tomato	cytosol	90.38	92.16
Os02t0796900-00	Rice	cytosol	88.46	92.0
Bra023970.1-P	Field mustard	cytosol	96.15	90.91
Zm00001d045121_P001	Maize	cytosol	88.46	90.2
KRH12895	Soybean	cytosol	88.46	90.2
KRH37867	Soybean	cytosol	88.46	90.2
KRH52367	Soybean	cytosol	88.46	90.2
KRH61699	Soybean	cytosol	88.46	90.2
Zm00001d018383_P002	Maize	cytosol	88.46	90.2
Os02t0797200-01	Rice	cytosol	88.46	90.2
Os06t0181566-01	Rice	plastid	88.46	90.2
EES05958	Sorghum	cytosol	88.46	90.2
TraesCS6A01G360400.1	Wheat	cytosol	84.62	86.27
TraesCS7D01G147000.1	Wheat	cytosol	84.62	86.27
TraesCS7A01G145700.1	Wheat	cytosol	84.62	86.27
TraesCS6D01G343900.1	Wheat	cytosol	84.62	86.27
Bra039161.1-P	Field mustard	cytosol	84.62	86.27
TraesCS6B01G393300.1	Wheat	cytosol	84.62	86.27
KRH52368	Soybean	cytosol	88.46	83.64
VIT_11s0149g00220.t01	Wine grape	mitochondrion	92.31	80.0
Bra040064.1-P	Field mustard	cytosol	96.15	76.92
VIT_04s0008g06030.t01	Wine grape	cytosol	90.38	70.15
Zm00001d035838_P001	Maize	extracellular	90.38	65.28
GSMUA_Achr3P13390_001	Banana	cytosol	90.38	64.38
CDY62505	Canola	cytosol, plastid	96.15	64.1
HORVU0Hr1G017360.1	Barley	mitochondrion	84.62	60.27
VIT_11s0149g00240.t01	Wine grape	cytosol	90.38	60.26
PGSC0003DMT400030914	Potato	cytosol, golgi, mitochondrion, vacuole	65.38	58.62
Solyc12g010350.1.1	Tomato	nucleus, unclear	90.38	55.29
GSMUA_Achr7P19310_001	Banana	cytosol	90.38	52.81
Zm00001d052025_P001	Maize	mitochondrion	88.46	47.42
HORVU7Hr1G029860.1	Barley	plastid	84.62	35.77
OQU75968	Sorghum	cytosol	90.38	28.83

Protein Annotations

Gene3D:1.10.1620.10	MapMan:17.1.2.1.42	EnsemblPlantsGene:Bra032033	EnsemblPlants:Bra032033.1	EnsemblPlants:Bra032033.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:IPR023626	UniProt:M4ETA3	PFAM:PD007914
PFAM:PF00832	ScanProsite:PS00051	PANTHER:PTHR19970	PANTHER:PTHR19970:SF13	InterPro:Ribosomal_L39	InterPro:Ribosomal_L39_CS
InterPro:Ribosomal_L39e_dom_sf	SUPFAM:SSF48662	UniParc:UPI0002544EF0	:	:	:

Description

AT4G31985 (E=5e-025) | 60S ribosomal protein L39 (RPL39C)

Coordinates

chrA04:+:11358955..11359203

Molecular Weight (calculated)

6558.2 Da

IEP (calculated)

12.818

GRAVY (calculated)

-1.346

Length

52 amino acids

Sequence
(BLAST)

1: MQPSHKSFMI KKKLAKKMRQ NRPIPHWIRL RTDNTIRYNA KRRHWRRTKL GF

Best Arabidopsis Sequence Match ( AT4G31985.1 )
(BLAST)

1: MPSHKSFMIK KKLGKKMRQN RPIPHWIRLR TDNTIRYNAK RRHWRRTKLG F

Arabidopsis Description

RPL39C60S ribosomal protein L39-1 [Source:UniProtKB/Swiss-Prot;Acc:P51424]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.