Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH61699 | Soybean | cytosol | 100.0 | 98.04 |
| Zm00001d045121_P001 | Maize | cytosol | 100.0 | 98.04 |
| Os02t0797200-01 | Rice | cytosol | 100.0 | 98.04 |
| KRH52367 | Soybean | cytosol | 100.0 | 98.04 |
| KRH37867 | Soybean | cytosol | 100.0 | 98.04 |
| KRH12895 | Soybean | cytosol | 100.0 | 98.04 |
| GSMUA_Achr1P15810_001 | Banana | cytosol | 68.0 | 97.14 |
| Os06t0181566-01 | Rice | plastid | 98.0 | 96.08 |
| TraesCS7D01G147000.1 | Wheat | cytosol | 96.0 | 94.12 |
| TraesCS7A01G145700.1 | Wheat | cytosol | 96.0 | 94.12 |
| TraesCS6D01G343900.1 | Wheat | cytosol | 96.0 | 94.12 |
| TraesCS6B01G393300.1 | Wheat | cytosol | 96.0 | 94.12 |
| TraesCS6A01G360400.1 | Wheat | cytosol | 96.0 | 94.12 |
| PGSC0003DMT400003718 | Potato | cytosol | 96.0 | 94.12 |
| Solyc07g005050.2.1 | Tomato | cytosol | 94.0 | 92.16 |
| KRH52368 | Soybean | cytosol | 100.0 | 90.91 |
| AT2G25210.1 | Thale cress | cytosol | 80.0 | 90.91 |
| CDY43252 | Canola | cytosol | 62.0 | 88.57 |
| Bra032033.1-P | Field mustard | cytosol | 92.0 | 88.46 |
| AT4G31985.1 | Thale cress | cytosol | 90.0 | 88.24 |
| Bra039161.1-P | Field mustard | cytosol | 88.0 | 86.27 |
| AT3G02190.1 | Thale cress | cytosol | 86.0 | 84.31 |
| Bra023970.1-P | Field mustard | cytosol | 90.0 | 81.82 |
| VIT_11s0149g00220.t01 | Wine grape | mitochondrion | 96.0 | 80.0 |
| VIT_04s0008g06030.t01 | Wine grape | cytosol | 96.0 | 71.64 |
| Bra040064.1-P | Field mustard | cytosol | 92.0 | 70.77 |
| Zm00001d035838_P001 | Maize | extracellular | 100.0 | 69.44 |
| GSMUA_Achr3P13390_001 | Banana | cytosol | 98.0 | 67.12 |
| HORVU0Hr1G017360.1 | Barley | mitochondrion | 96.0 | 65.75 |
| VIT_11s0149g00240.t01 | Wine grape | cytosol | 94.0 | 60.26 |
| CDY62505 | Canola | cytosol, plastid | 92.0 | 58.97 |
| Solyc12g010350.1.1 | Tomato | nucleus, unclear | 94.0 | 55.29 |
| HORVU7Hr1G029860.1 | Barley | plastid | 96.0 | 39.02 |
| OQU75968 | Sorghum | cytosol | 100.0 | 30.67 |
Protein Annotations
| Gene3D:1.10.1620.10 | MapMan:17.1.2.1.42 | UniProt:A0A0P0VQP9 | ProteinID:BAS81371.1 | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR023626 | EnsemblPlantsGene:Os02g0796900 | EnsemblPlants:Os02t0796900-00 | PFAM:PD007914 | PFAM:PF00832 | ScanProsite:PS00051 |
| PANTHER:PTHR19970 | PANTHER:PTHR19970:SF13 | InterPro:Ribosomal_L39 | InterPro:Ribosomal_L39_CS | InterPro:Ribosomal_L39e_dom_sf | SUPFAM:SSF48662 |
| UniParc:UPI0000DF08C1 | : | : | : | : | : |
Description
Similar to 60S ribosomal protein L39. (Os02t0796900-00)
Coordinates
chr2:+:33914149..33914434
Molecular Weight (calculated)
6382.0 Da
IEP (calculated)
12.695
GRAVY (calculated)
-1.494
Length
50 amino acids
Sequence
(BLAST)
(BLAST)
1: PSHKTFRIKK KLAKKMRQNR PIPYWIRMRT DNTIRYNAKR RHWRRTKLGF
1: MPSHKSFMIK KKLGKKMRQN RPIPHWIRLR TDNTIRYNAK RRHWRRTKLG F
Arabidopsis Description
RPL39C60S ribosomal protein L39-1 [Source:UniProtKB/Swiss-Prot;Acc:P51424]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.