Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 4
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES05958 | Sorghum | cytosol | 96.08 | 96.08 |
| Zm00001d045121_P001 | Maize | cytosol | 96.08 | 96.08 |
| Zm00001d018383_P002 | Maize | cytosol | 96.08 | 96.08 |
| TraesCS7D01G147000.1 | Wheat | cytosol | 96.08 | 96.08 |
| TraesCS7A01G145700.1 | Wheat | cytosol | 96.08 | 96.08 |
| KRH12895 | Soybean | cytosol | 96.08 | 96.08 |
| KRH37867 | Soybean | cytosol | 96.08 | 96.08 |
| KRH52367 | Soybean | cytosol | 96.08 | 96.08 |
| TraesCS6D01G343900.1 | Wheat | cytosol | 96.08 | 96.08 |
| KRH61699 | Soybean | cytosol | 96.08 | 96.08 |
| TraesCS6B01G393300.1 | Wheat | cytosol | 96.08 | 96.08 |
| Os02t0797200-01 | Rice | cytosol | 96.08 | 96.08 |
| Os06t0181566-01 | Rice | plastid | 96.08 | 96.08 |
| TraesCS6A01G360400.1 | Wheat | cytosol | 96.08 | 96.08 |
| Os02t0796900-00 | Rice | cytosol | 94.12 | 96.0 |
| GSMUA_Achr1P15810_001 | Banana | cytosol | 64.71 | 94.29 |
| KRH52368 | Soybean | cytosol | 94.12 | 87.27 |
| VIT_11s0149g00220.t01 | Wine grape | mitochondrion | 96.08 | 81.67 |
| VIT_04s0008g06030.t01 | Wine grape | cytosol | 92.16 | 70.15 |
| HORVU0Hr1G017360.1 | Barley | mitochondrion | 96.08 | 67.12 |
| Zm00001d035838_P001 | Maize | extracellular | 94.12 | 66.67 |
| GSMUA_Achr3P13390_001 | Banana | cytosol | 94.12 | 65.75 |
| PGSC0003DMT400030914 | Potato | cytosol, golgi, mitochondrion, vacuole | 72.55 | 63.79 |
| VIT_11s0149g00240.t01 | Wine grape | cytosol | 94.12 | 61.54 |
| Solyc12g010350.1.1 | Tomato | nucleus, unclear | 98.04 | 58.82 |
| GSMUA_Achr7P19310_001 | Banana | cytosol | 94.12 | 53.93 |
| Zm00001d052025_P001 | Maize | mitochondrion | 96.08 | 50.52 |
| HORVU7Hr1G029860.1 | Barley | plastid | 96.08 | 39.84 |
| OQU75968 | Sorghum | cytosol | 94.12 | 29.45 |
Protein Annotations
| Gene3D:1.10.1620.10 | EntrezGene:102578685 | MapMan:17.1.2.1.42 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR023626 |
| UniProt:M0ZM74 | HAMAP:MF_00629 | PFAM:PD007914 | PFAM:PF00832 | EnsemblPlantsGene:PGSC0003DMG400001463 | PGSC:PGSC0003DMG400001463 |
| EnsemblPlants:PGSC0003DMT400003718 | ScanProsite:PS00051 | PANTHER:PTHR19970 | PANTHER:PTHR19970:SF13 | InterPro:Ribosomal_L39 | InterPro:Ribosomal_L39_CS |
| InterPro:Ribosomal_L39e_dom_sf | SUPFAM:SSF48662 | UniParc:UPI000296E1A7 | RefSeq:XP_006338352.1 | : | : |
Description
60S ribosomal protein L39-3 [Source:PGSC_GENE;Acc:PGSC0003DMG400001463]
Coordinates
chr2:+:45473236..45473768
Molecular Weight (calculated)
6485.1 Da
IEP (calculated)
12.621
GRAVY (calculated)
-1.408
Length
51 amino acids
Sequence
(BLAST)
(BLAST)
1: MPSHKTFMIK KKLAKKQRQN RPIPYWIRMR TDNTIRYNAK RRHWRRTKLG F
1: MPSHKSFMIK KKLGKKMRQN RPIPHWIRLR TDNTIRYNAK RRHWRRTKLG F
Arabidopsis Description
RPL39C60S ribosomal protein L39-1 [Source:UniProtKB/Swiss-Prot;Acc:P51424]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.