Factsheet for GSMUA_Achr3P13390_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P15810_001	Banana	cytosol	47.95	100.0
Zm00001d018383_P002	Maize	cytosol	68.49	98.04
Os02t0797200-01	Rice	cytosol	68.49	98.04
Zm00001d045121_P001	Maize	cytosol	68.49	98.04
KRH61699	Soybean	cytosol	68.49	98.04
KRH52367	Soybean	cytosol	68.49	98.04
EES05958	Sorghum	cytosol	68.49	98.04
KRH37867	Soybean	cytosol	68.49	98.04
KRH12895	Soybean	cytosol	68.49	98.04
Os02t0796900-00	Rice	cytosol	67.12	98.0
Os06t0181566-01	Rice	plastid	67.12	96.08
TraesCS6A01G360400.1	Wheat	cytosol	65.75	94.12
PGSC0003DMT400003718	Potato	cytosol	65.75	94.12
TraesCS6B01G393300.1	Wheat	cytosol	65.75	94.12
TraesCS6D01G343900.1	Wheat	cytosol	65.75	94.12
TraesCS7A01G145700.1	Wheat	cytosol	65.75	94.12
TraesCS7D01G147000.1	Wheat	cytosol	65.75	94.12
AT2G25210.1	Thale cress	cytosol	56.16	93.18
AT4G31985.1	Thale cress	cytosol	64.38	92.16
Solyc07g005050.2.1	Tomato	cytosol	64.38	92.16
Bra032033.1-P	Field mustard	cytosol	64.38	90.38
KRH52368	Soybean	cytosol	67.12	89.09
CDY43252	Canola	cytosol	42.47	88.57
Bra039161.1-P	Field mustard	cytosol	61.64	88.24
AT3G02190.1	Thale cress	cytosol	60.27	86.27
Bra023970.1-P	Field mustard	cytosol	63.01	83.64
VIT_11s0149g00220.t01	Wine grape	mitochondrion	68.49	83.33
VIT_04s0008g06030.t01	Wine grape	cytosol	69.86	76.12
Bra040064.1-P	Field mustard	cytosol	65.75	73.85
Zm00001d035838_P001	Maize	extracellular	68.49	69.44
HORVU0Hr1G017360.1	Barley	mitochondrion	68.49	68.49
CDY62505	Canola	cytosol, plastid	69.86	65.38
VIT_11s0149g00240.t01	Wine grape	cytosol	69.86	65.38
Solyc12g010350.1.1	Tomato	nucleus, unclear	71.23	61.18
GSMUA_Achr7P19310_001	Banana	cytosol	71.23	58.43
Zm00001d052025_P001	Maize	mitochondrion	73.97	55.67
HORVU7Hr1G029860.1	Barley	plastid	67.12	39.84
OQU75968	Sorghum	cytosol	69.86	31.29

Protein Annotations

Gene3D:1.10.1620.10	MapMan:17.1.2.1.42	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr3G13390_001	EnsemblPlants:GSMUA_Achr3P13390_001
EnsemblPlants:GSMUA_Achr3T13390_001	InterPro:IPR023626	UniProt:M0SEA6	HAMAP:MF_00629	PFAM:PD007914	PFAM:PF00832
ScanProsite:PS00051	PANTHER:PTHR19970	PANTHER:PTHR19970:SF13	InterPro:Ribosomal_L39	InterPro:Ribosomal_L39_CS	InterPro:Ribosomal_L39e_dom_sf
SUPFAM:SSF48662	UniParc:UPI000295CEBC	:	:	:	:

Description

60S ribosomal protein L39 [Source:GMGC_GENE;Acc:GSMUA_Achr3G13390_001]

Coordinates

chr3:-:9856438..9857449

Molecular Weight (calculated)

9334.7 Da

IEP (calculated)

12.243

GRAVY (calculated)

-1.299

Length

73 amino acids

Sequence
(BLAST)

1: MCIYIYMYGF RRCHRPEDRR AKMPSHKTFR IKKKLAKKMR QNRPIPHWIR MRTDNTIRYN AKRRHWRRTK LGF

Best Arabidopsis Sequence Match ( AT4G31985.1 )
(BLAST)

1: MPSHKSFMIK KKLGKKMRQN RPIPHWIRLR TDNTIRYNAK RRHWRRTKLG F

Arabidopsis Description

RPL39C60S ribosomal protein L39-1 [Source:UniProtKB/Swiss-Prot;Acc:P51424]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.