Factsheet for Bra023970.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002778.1-P
Bra013951.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G31985.1	Bra013951.1-P	AT4G26110.1	21798944
AT4G31985.1	Bra002778.1-P	AT5G56950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032033.1-P	Field mustard	cytosol	90.91	96.15
GSMUA_Achr1P15810_001	Banana	cytosol	60.0	94.29
Solyc07g005050.2.1	Tomato	cytosol	87.27	94.12
AT4G31985.1	Thale cress	cytosol	87.27	94.12
Os02t0796900-00	Rice	cytosol	81.82	90.0
Os02t0797200-01	Rice	cytosol	81.82	88.24
Zm00001d045121_P001	Maize	cytosol	81.82	88.24
Zm00001d018383_P002	Maize	cytosol	81.82	88.24
TraesCS7D01G147000.1	Wheat	cytosol	81.82	88.24
TraesCS7A01G145700.1	Wheat	cytosol	81.82	88.24
TraesCS6D01G343900.1	Wheat	cytosol	81.82	88.24
TraesCS6B01G393300.1	Wheat	cytosol	81.82	88.24
TraesCS6A01G360400.1	Wheat	cytosol	81.82	88.24
Os06t0181566-01	Rice	plastid	81.82	88.24
KRH61699	Soybean	cytosol	81.82	88.24
KRH52367	Soybean	cytosol	81.82	88.24
KRH37867	Soybean	cytosol	81.82	88.24
KRH12895	Soybean	cytosol	81.82	88.24
EES05958	Sorghum	cytosol	81.82	88.24
Bra039161.1-P	Field mustard	cytosol	78.18	84.31
KRH52368	Soybean	cytosol	81.82	81.82
VIT_11s0149g00220.t01	Wine grape	mitochondrion	85.45	78.33
Bra040064.1-P	Field mustard	cytosol	89.09	75.38
VIT_04s0008g06030.t01	Wine grape	cytosol	83.64	68.66
Zm00001d035838_P001	Maize	extracellular	83.64	63.89
GSMUA_Achr3P13390_001	Banana	cytosol	83.64	63.01
HORVU0Hr1G017360.1	Barley	mitochondrion	81.82	61.64
PGSC0003DMT400030914	Potato	cytosol, golgi, mitochondrion, vacuole	63.64	60.34
VIT_11s0149g00240.t01	Wine grape	cytosol	83.64	58.97
Solyc12g010350.1.1	Tomato	nucleus, unclear	87.27	56.47
GSMUA_Achr7P19310_001	Banana	cytosol	85.45	52.81
Zm00001d052025_P001	Maize	mitochondrion	81.82	46.39
HORVU7Hr1G029860.1	Barley	plastid	81.82	36.59
OQU75968	Sorghum	cytosol	83.64	28.22

Protein Annotations

Gene3D:1.10.1620.10	MapMan:17.1.2.1.42	EnsemblPlantsGene:Bra023970	EnsemblPlants:Bra023970.1	EnsemblPlants:Bra023970.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR023626	UniProt:M4E5B6	PFAM:PD007914	PFAM:PF00832	ScanProsite:PS00051
PANTHER:PTHR19970	PANTHER:PTHR19970:SF13	InterPro:Ribosomal_L39	InterPro:Ribosomal_L39_CS	InterPro:Ribosomal_L39e_dom_sf	SUPFAM:SSF48662
UniParc:UPI0002540FE0	:	:	:	:	:

Description

AT4G31985 (E=2e-024) | 60S ribosomal protein L39 (RPL39C)

Coordinates

chrA03:+:28535586..28536035

Molecular Weight (calculated)

6914.5 Da

IEP (calculated)

12.439

GRAVY (calculated)

-1.511

Length

55 amino acids

Sequence
(BLAST)

1: METEQPSHKS FMIKKKLAKK QRQNRPIPHW IRLRTDNTIR YNAKRRHWRR TKLGF

Best Arabidopsis Sequence Match ( AT4G31985.1 )
(BLAST)

1: MPSHKSFMIK KKLGKKMRQN RPIPHWIRLR TDNTIRYNAK RRHWRRTKLG F

Arabidopsis Description

RPL39C60S ribosomal protein L39-1 [Source:UniProtKB/Swiss-Prot;Acc:P51424]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.