Factsheet for Bra002778.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000455.1-P
Bra002778.1-P
Bra004740.1-P
Bra004943.1-P
Bra006957.1-P
Bra013951.1-P
Bra031083.1-P
Bra036720.1-P
Bra037738.1-P
Bra039161.1-P
Bra039308.1-P
Bra040674.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56950.1	Bra006957.1-P	AT2G19480.1	19228338
AT5G56950.1	Bra031083.1-P	AT2G19480.1	19228338
AT5G56950.1	Bra036720.1-P	AT2G19480.1	19228338
AT5G56950.1	Bra040674.1-P	AT2G19480.1	19228338
AT5G56950.1	Bra006957.1-P	AT2G19480.1	19825649
AT5G56950.1	Bra031083.1-P	AT2G19480.1	19825649
AT5G56950.1	Bra036720.1-P	AT2G19480.1	19825649
AT5G56950.1	Bra040674.1-P	AT2G19480.1	19825649
AT5G56950.1	Bra004740.1-P	AT2G43060.1	21798944
AT5G56950.1	Bra037738.1-P	AT2G43060.1	21798944
AT5G56950.1	Bra004943.1-P	AT2G45860.1	21798944
AT5G56950.1	Bra039308.1-P	AT2G45860.1	21798944
AT5G56950.1	Bra000455.1-P	AT2G47610.1	21798944
AT5G56950.1	Bra039161.1-P	AT3G02190.1	21798944
AT5G56950.1	Bra013951.1-P	AT4G26110.1	19228338
AT5G56950.1	Bra002778.1-P	AT5G56950.1	19228338
AT5G56950.1	Bra002778.1-P	AT5G56950.1	19825649

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50473	Canola	nucleus	41.45	91.49
CDY50468	Canola	nucleus	76.14	83.6
CDY50472	Canola	nucleus	73.73	81.82
AT5G56950.1	Thale cress	nucleus	73.49	81.55
Bra013951.1-P	Field mustard	nucleus	63.13	71.58
Bra036720.1-P	Field mustard	nucleus	61.45	69.11
KRH37411	Soybean	nucleus	59.04	67.12
VIT_09s0002g02330.t01	Wine grape	nucleus	61.45	66.93
Bra040674.1-P	Field mustard	nucleus	60.48	66.76
Solyc12g008940.1.1	Tomato	nucleus	59.28	65.78
KRH19202	Soybean	nucleus	59.28	65.6
PGSC0003DMT400055114	Potato	nucleus	59.04	65.51
KRH12415	Soybean	endoplasmic reticulum	57.11	65.29
Solyc05g018810.2.1	Tomato	nucleus	59.04	65.16
KRH02690	Soybean	nucleus	59.04	64.64
VIT_11s0016g02050.t01	Wine grape	nucleus	60.0	64.51
PGSC0003DMT400000751	Potato	nucleus	57.35	64.32
Bra031083.1-P	Field mustard	nucleus	58.07	63.59
Bra006957.1-P	Field mustard	nucleus	33.49	61.23
Bra027399.1-P	Field mustard	nucleus	38.07	57.25
Bra016541.1-P	Field mustard	cytosol	16.14	28.63
Bra025687.1-P	Field mustard	cytosol	13.01	23.18

Protein Annotations

MapMan:12.2.6	Gene3D:3.30.1120.90	EnsemblPlantsGene:Bra002778	EnsemblPlants:Bra002778.1	EnsemblPlants:Bra002778.1-P	ncoils:Coil
GO:GO:0000724	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006259	GO:GO:0006334	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009294
GO:GO:0009987	GO:GO:0016043	GO:GO:0016444	GO:GO:0042393	GO:GO:0042802	UniProt:M4CEZ6
InterPro:NAP-like_sf	InterPro:NAP_family	PFAM:PF00956	PANTHER:PTHR11875	PANTHER:PTHR11875:SF101	SUPFAM:SSF143113
UniParc:UPI0002544BFA	SEG:seg	:	:	:	:

Description

AT5G56950 (E=4e-141) NFA03, NFA3, NAP1;3 | NAP1;3 (NUCLEOSOME ASSEMBLY PROTEIN 1;3); DNA binding

Coordinates

chrA10:+:7634838..7638059

Molecular Weight (calculated)

47499.1 Da

IEP (calculated)

4.700

GRAVY (calculated)

-0.700

Length

415 amino acids

Sequence
(BLAST)

001: MSNDKDSFNV GDLTAALKDE DRAGLVNALK NKLQNLAGQH SDVLENLTPK IRRRVEVLRE IQGKHDEIEA KFREERAALE AKYQKLYQPL YTKRYEIVNG
101: AIEVEGAQED VKMDQGEEKT AEEKGVPSFW LTALKNNDVI SEEITERDEG ALMYLKDIKW CKIEEPKGFK LEFFFDQNPY FKNTLLTKAY HMIDEDEPLL
201: EKAIGTEIDW YPGKCLTQKI LKKKPKKGAK NAKPITKTED CESFFNFFSP PQVPDDDEDI DEDRAEELQN LMEQDYDIGS TIREKIIPHA VSWFTGEAIE
301: GEEKEAGLRS TMDNKGRGLL SASNSKMLCV LSEVPCKAKC LRIEEREAVP ETSPDKPSVS ASDSLEQACM FFFLQTLRNQ KSSSLIVRDE FRESSSRINN
401: RILSEHYPIG QLQLF

Best Arabidopsis Sequence Match ( AT5G56950.1 )
(BLAST)

001: MSNDKDSFNV SDLTSALKDE DRAGLVNALK NKLQNLAGQH SDVLENLTPK IRRRVEVLRE IQGKHDEIET KFREERAALE AKYQKLYQPL YNKRYEIVNG
101: ATEVEGAPED AKMDQGDEKT AEEKGVPSFW LTALKNNDVI SEEITERDEG ALIYLKDIKW CKIEEPKGFK LEFFFDQNPY FKNTLLTKAY HMIDEDEPLL
201: EKAIGTEIDW YPGKCLTQKI LKKKPKKGAK NAKPITKTED CESFFNFFNP PQVPDDDEDI DEERAEELQN LMEQDYDIGS TIREKIIPHA VSWFTGEAIE
301: GEEFEIDNDD EDDIDEDEDE DEEDEDEDEE EDDEDEEEEV SKTKKKPSVL HKKGGRPQVT DDQQGERPPE CKQQ

Arabidopsis Description

NAP1;3Nucleosome assembly protein 1;3 [Source:UniProtKB/Swiss-Prot;Acc:Q94K07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.