Factsheet for Bra031083.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002778.1-P
Bra004943.1-P
Bra006957.1-P
Bra013951.1-P
Bra016526.1-P
Bra018613.1-P
Bra025708.1-P
Bra031083.1-P
Bra031633.1-P
Bra036720.1-P
Bra039308.1-P
Bra040674.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19480.1	Bra018613.1-P	AT1G08580.1	21798944
AT2G19480.1	Bra031633.1-P	AT1G08580.1	21798944
AT2G19480.1	Bra016526.1-P	AT1G19050.1	18642946
AT2G19480.1	Bra025708.1-P	AT1G19050.1	18642946
AT2G19480.1	Bra006957.1-P	AT2G19480.1	19228338
AT2G19480.1	Bra031083.1-P	AT2G19480.1	19228338
AT2G19480.1	Bra036720.1-P	AT2G19480.1	19228338
AT2G19480.1	Bra040674.1-P	AT2G19480.1	19228338
AT2G19480.1	Bra004943.1-P	AT2G45860.1	21798944
AT2G19480.1	Bra039308.1-P	AT2G45860.1	21798944
AT2G19480.1	Bra013951.1-P	AT4G26110.1	19228338
AT2G19480.1	Bra002778.1-P	AT5G56950.1	19228338

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21663	Canola	nucleus	88.13	95.7
Bra036720.1-P	Field mustard	nucleus	83.11	85.37
Bra040674.1-P	Field mustard	nucleus	81.27	81.91
AT2G19480.1	Thale cress	nucleus	78.89	78.89
VIT_09s0002g02330.t01	Wine grape	nucleus	71.24	70.87
VIT_11s0016g02050.t01	Wine grape	nucleus	69.66	68.39
Bra013951.1-P	Field mustard	nucleus	64.91	67.21
Bra006957.1-P	Field mustard	nucleus	39.58	66.08
Bra002778.1-P	Field mustard	nucleus	63.59	58.07
Bra027399.1-P	Field mustard	nucleus	39.58	54.35
HORVU1Hr1G018340.1	Barley	cytosol	2.64	34.48
Bra016541.1-P	Field mustard	cytosol	19.0	30.77
Bra025687.1-P	Field mustard	cytosol	13.72	22.32

Protein Annotations

EnsemblPlants:Bra031083.1	EnsemblPlants:Bra031083.1-P	EnsemblPlantsGene:Bra031083	Gene3D:3.30.1120.90	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
InterPro:NAP-like_sf	InterPro:NAP_family	ncoils:Coil	PANTHER:PTHR11875	PANTHER:PTHR11875:SF101	PFAM:PF00956
SEG:seg	SUPFAM:SSF143113	UniParc:UPI00025429DF	UniProt:M4EQL2	MapMan:12.2.6	:

Description

AT4G26110 (E=4e-078) NAP1;1, ATNAP1;1 | NAP1;1 (NUCLEOSOME ASSEMBLY PROTEIN1;1); DNA binding

Coordinates

chrA09:-:32543872..32545810

Molecular Weight (calculated)

43975.7 Da

IEP (calculated)

4.129

GRAVY (calculated)

-0.951

Length

379 amino acids

Sequence
(BLAST)

001: MSNDNLNMSD LTAALNVEDR AGLVNALKNK LQNLAGQHSD VLENLTPIVR KRVEALREIQ ASQIFNLLFL FFCVWYENQH NEIEAKFFEE KAALEAKYQK
101: LYQPFYTKRY EIVNGVVEVE GAPEEEDKAA EEKGVPDFWL IALKNNEITT EEITERDEGA LKYLKDIKWN KVEEPKGFKL EFFFDENPYF KNTLLTKTYH
201: IIDEDEPILE KAIGTEIEWY PGKCLTQKIL KKKPKKGSKN TKPITKTEEC ESFFNFFNPP QVPEDEDDLD EELFSVVGSE SVHCCLSCRS TIKEKIISHA
301: VSWFTGEAVD EDDLEMDDDE EDEEDEEEDE EEDEEDEDDD DDDEEEEEEK GKKSRKKKSG RSQLGEGQQG ERPPECKQQ

Best Arabidopsis Sequence Match ( AT2G19480.3 )
(BLAST)

001: MSNDKDSMNM SDLSTALNEE DRAGLVNALK NKLQNLAGQH SDVLENLTPP VRKRVEFLRE IQNQYDEMEA KFFEERAALE AKYQKLYQPL YTKRYEIVNG
101: VVEVEGAAEE VKSEQGEDKS AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY FKNTVLTKTY HMIDEDEPIL
201: EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE
301: ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KAGRSQLAEG QAGERPPECK QQ

Arabidopsis Description

NAP1;2Nucleosome assembly protein 1;2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.