Factsheet for Bra006957.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002778.1-P
Bra004943.1-P
Bra006957.1-P
Bra013951.1-P
Bra016526.1-P
Bra018613.1-P
Bra025708.1-P
Bra031083.1-P
Bra031633.1-P
Bra036720.1-P
Bra039308.1-P
Bra040674.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19480.1	Bra018613.1-P	AT1G08580.1	21798944
AT2G19480.1	Bra031633.1-P	AT1G08580.1	21798944
AT2G19480.1	Bra016526.1-P	AT1G19050.1	18642946
AT2G19480.1	Bra025708.1-P	AT1G19050.1	18642946
AT2G19480.1	Bra006957.1-P	AT2G19480.1	19228338
AT2G19480.1	Bra031083.1-P	AT2G19480.1	19228338
AT2G19480.1	Bra036720.1-P	AT2G19480.1	19228338
AT2G19480.1	Bra040674.1-P	AT2G19480.1	19228338
AT2G19480.1	Bra004943.1-P	AT2G45860.1	21798944
AT2G19480.1	Bra039308.1-P	AT2G45860.1	21798944
AT2G19480.1	Bra013951.1-P	AT4G26110.1	19228338
AT2G19480.1	Bra002778.1-P	AT5G56950.1	19228338

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036720.1-P	Field mustard	nucleus	71.37	43.9
Bra040674.1-P	Field mustard	nucleus	70.04	42.29
AT2G19480.1	Thale cress	nucleus	67.84	40.63
Bra031083.1-P	Field mustard	nucleus	66.08	39.58
Bra027399.1-P	Field mustard	nucleus	45.37	37.32
VIT_11s0016g02050.t01	Wine grape	nucleus	62.56	36.79
VIT_09s0002g02330.t01	Wine grape	nucleus	59.91	35.7
Bra013951.1-P	Field mustard	nucleus	56.83	35.25
Bra002778.1-P	Field mustard	nucleus	61.23	33.49
Bra016541.1-P	Field mustard	cytosol	19.82	19.23
Bra025687.1-P	Field mustard	cytosol	16.74	16.31
HORVU1Hr1G018340.1	Barley	cytosol	0.44	3.45

Protein Annotations

EnsemblPlants:Bra006957.1	EnsemblPlants:Bra006957.1-P	EnsemblPlantsGene:Bra006957	Gene3D:3.30.1120.90	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
InterPro:NAP-like_sf	InterPro:NAP_family	PANTHER:PTHR11875	PANTHER:PTHR11875:SF101	PFAM:PF00956	SUPFAM:SSF143113
UniParc:UPI0002542EAD	UniProt:M4CRW5	MapMan:12.2.6	:	:	:

Description

AT2G19480 (E=1e-079) NFA02, NFA2, NAP1;2 | NAP1;2 (NUCLEOSOME ASSEMBLY PROTEIN 1;2); DNA binding

Coordinates

chrA09:-:26488558..26490801

Molecular Weight (calculated)

26475.8 Da

IEP (calculated)

8.367

GRAVY (calculated)

-0.704

Length

227 amino acids

Sequence
(BLAST)

001: MLFATRVAST DILRNQFSKQ HDEIEANILE ERAALETKYQ KLYQPFYTKR YEIVTGAVEV DGAPEEVKIE QGENKAVEEK GVPDFWLIAL KNNEITAEEI
101: TERDEGALKY LKDIKWNRVE EPKGFKLEFF IDENPYFKNT VLTKTYHMID EDEPILKKAI GIEWYPGNCL TQKILKKKGS KNINPIMVSP RLRTVRVSSN
201: FSVHLKLMDN EKFRSKRQAK NKEVKEG

Best Arabidopsis Sequence Match ( AT2G19480.1 )
(BLAST)

001: MSNDKDSMNM SDLSTALNEE DRAGLVNALK NKLQNLAGQH SDVLENLTPP VRKRVEFLRE IQNQYDEMEA KFFEERAALE AKYQKLYQPL YTKRYEIVNG
101: VVEVEGAAEE VKSEQGEDKS AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY FKNTVLTKTY HMIDEDEPIL
201: EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE
301: ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KSSAGHKKAG RSQLAEGQAG ERPPECKQQ

Arabidopsis Description

NAP1;2Nucleosome assembly protein 1;2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.