Factsheet for Bra013951.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002778.1-P
Bra004740.1-P
Bra004943.1-P
Bra006957.1-P
Bra009906.1-P
Bra012992.1-P
Bra013951.1-P
Bra020530.1-P
Bra031083.1-P
Bra032122.1-P
Bra036720.1-P
Bra037738.1-P
Bra039161.1-P
Bra039227.1-P
Bra039308.1-P
Bra040674.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26110.1	Bra006957.1-P	AT2G19480.1	19228338
AT4G26110.1	Bra031083.1-P	AT2G19480.1	19228338
AT4G26110.1	Bra036720.1-P	AT2G19480.1	19228338
AT4G26110.1	Bra040674.1-P	AT2G19480.1	19228338
AT4G26110.1	Bra006957.1-P	AT2G19480.1	21798944
AT4G26110.1	Bra031083.1-P	AT2G19480.1	21798944
AT4G26110.1	Bra036720.1-P	AT2G19480.1	21798944
AT4G26110.1	Bra040674.1-P	AT2G19480.1	21798944
AT4G26110.1	Bra032122.1-P	AT2G24090.1	21798944
AT4G26110.1	Bra039227.1-P	AT2G24090.1	21798944
AT4G26110.1	Bra004740.1-P	AT2G43060.1	21798944
AT4G26110.1	Bra037738.1-P	AT2G43060.1	21798944
AT4G26110.1	Bra004943.1-P	AT2G45860.1	21798944
AT4G26110.1	Bra039308.1-P	AT2G45860.1	21798944
AT4G26110.1	Bra039161.1-P	AT3G02190.1	21798944
AT4G26110.1	Bra013951.1-P	AT4G26110.1	19228338
AT4G26110.1	Bra013951.1-P	AT4G26110.1	21798944
AT4G26110.1	Bra009906.1-P	AT5G26720.1	21798944
AT4G26110.1	Bra020530.1-P	AT5G26720.1	21798944
AT4G26110.1	Bra002778.1-P	AT5G56950.1	21798944
AT4G26110.1	Bra012992.1-P	AT5G60960.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89363	Canola	nucleus	99.45	99.45
AT4G26110.1	Thale cress	nucleus	80.33	79.03
Bra036720.1-P	Field mustard	nucleus	70.49	69.92
VIT_09s0002g02330.t01	Wine grape	nucleus	72.68	69.82
Bra040674.1-P	Field mustard	nucleus	70.77	68.88
KRH12415	Soybean	endoplasmic reticulum	68.31	68.87
KRH37411	Soybean	nucleus	68.31	68.49
PGSC0003DMT400055114	Potato	nucleus	69.67	68.18
VIT_11s0016g02050.t01	Wine grape	nucleus	71.31	67.62
Solyc12g008940.1.1	Tomato	nucleus	68.58	67.11
Solyc05g018810.2.1	Tomato	nucleus	68.85	67.02
KRH19202	Soybean	nucleus	68.58	66.93
KRH02690	Soybean	nucleus	68.31	65.96
PGSC0003DMT400000751	Potato	nucleus	65.85	65.14
Bra031083.1-P	Field mustard	nucleus	67.21	64.91
Bra002778.1-P	Field mustard	nucleus	71.58	63.13
Bra027399.1-P	Field mustard	nucleus	42.9	56.88
Bra006957.1-P	Field mustard	nucleus	35.25	56.83
Bra016541.1-P	Field mustard	cytosol	20.49	32.05
Bra025687.1-P	Field mustard	cytosol	13.93	21.89

Protein Annotations

MapMan:12.2.6	Gene3D:3.30.1120.90	EnsemblPlantsGene:Bra013951	EnsemblPlants:Bra013951.1	EnsemblPlants:Bra013951.1-P	ncoils:Coil
GO:GO:0000724	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0006139
GO:GO:0006259	GO:GO:0006334	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008283
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016444	GO:GO:0030154	GO:GO:0042393
UniProt:M4DBU1	InterPro:NAP-like_sf	InterPro:NAP_family	PFAM:PF00956	PANTHER:PTHR11875	PANTHER:PTHR11875:SF101
SUPFAM:SSF143113	UniParc:UPI0002546BF0	SEG:seg	:	:	:

Description

AT4G26110 (E=2e-132) NAP1;1, ATNAP1;1 | NAP1;1 (NUCLEOSOME ASSEMBLY PROTEIN1;1); DNA binding

Coordinates

chrA01:+:8663158..8665479

Molecular Weight (calculated)

42437.7 Da

IEP (calculated)

4.135

GRAVY (calculated)

-1.159

Length

366 amino acids

Sequence
(BLAST)

001: MSNDKDNFNL ADLTDALKDE DRIGLMHALK NKLMAGQHSD VLESLTPQVR NRVEALKEIQ GKYDELEAKF RAERAVLEAK YEMLYQPFYT KRYEIVNGVT
101: EVETTPEDTK MDQEGEKPAE EKGVPSFWLT ALKNNDVTSE EVTERDEEAL KYLKDIKWYK TEEPKGFKLE FFFDSNPYFK NAVLTKSYHM IDEDEPLLEK
201: AIGTEIDWYP GKCLTQKILK KKPKKGSNSK PITKMEDCES FFNFFNPPQV PEEDEDIDED KAEELQNLME QDYDIGSAIR EKIIPHAVSW FTGEAMEGEE
301: FDIDDDDEED EDEDEEDDED EDEDDEDDEE DRKTRKKPSS GHKKGGRSQV VGDGQQGERP PECKQQ

Best Arabidopsis Sequence Match ( AT4G26110.1 )
(BLAST)

001: MSNDKDSFNV SDLTAALKDE DRAGLVNALK NKLQNLAGQR SDVLENLTPN VRKRVDALRD IQSQHDELEA KFREERAILE AKYQTLYQPL YVKRYEIVNG
101: TTEVELAPED DTKVDQGEEK TAEEKGVPSF WLTALKNNDV ISEEVTERDE GALKYLKDIK WCKIEEPKGF KLEFFFDTNP YFKNTVLTKS YHMIDEDEPL
201: LEKAMGTEID WYPGKCLTQK ILKKKPKKGS KNTKPITKLE DCESFFNFFS PPEVPDEDED IDEERAEDLQ NLMEQDYDIG STIREKIIPR AVSWFTGEAM
301: EAEDFEIDDD EEDDIDEDED EEDEEDEEDD DDEDEEESKT KKKPSIGNKK GGRSQIVGEG KQDERPPECK QQ

Arabidopsis Description

NAP1;1Nucleosome assembly protein 1;1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZI2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.