Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G56950.1 | Thale cress | nucleus | 84.68 | 84.22 |
| CDX94372 | Canola | nucleus | 80.65 | 81.74 |
| CDY50005 | Canola | nucleus | 76.61 | 81.2 |
| CDX89363 | Canola | nucleus | 79.57 | 80.87 |
| Bra013951.1-P | Field mustard | nucleus | 79.03 | 80.33 |
| AT2G19480.1 | Thale cress | nucleus | 76.08 | 74.67 |
| CDY65997 | Canola | nucleus | 16.94 | 74.12 |
| KRH37411 | Soybean | nucleus | 69.89 | 71.23 |
| VIT_09s0002g02330.t01 | Wine grape | nucleus | 72.31 | 70.6 |
| Solyc12g008940.1.1 | Tomato | nucleus | 70.97 | 70.59 |
| PGSC0003DMT400055114 | Potato | nucleus | 70.43 | 70.05 |
| KRH12415 | Soybean | endoplasmic reticulum | 68.01 | 69.7 |
| PGSC0003DMT400000751 | Potato | nucleus | 69.09 | 69.46 |
| VIT_11s0016g02050.t01 | Wine grape | nucleus | 72.04 | 69.43 |
| KRH19202 | Soybean | nucleus | 69.35 | 68.8 |
| KRH02690 | Soybean | nucleus | 69.62 | 68.34 |
| Solyc05g018810.2.1 | Tomato | nucleus | 68.55 | 67.82 |
| AT3G13782.2 | Thale cress | cytosol | 44.89 | 52.68 |
| CDY52429 | Canola | nucleus | 35.75 | 44.93 |
| AT1G18800.1 | Thale cress | cytosol | 20.97 | 30.47 |
| AT1G74560.3 | Thale cress | cytosol | 16.4 | 23.11 |
Protein Annotations
| MapMan:12.2.6 | Gene3D:3.30.1120.90 | EntrezGene:828717 | ProteinID:AEE85158.1 | ArrayExpress:AT4G26110 | EnsemblPlantsGene:AT4G26110 |
| RefSeq:AT4G26110 | TAIR:AT4G26110 | RefSeq:AT4G26110-TAIR-G | EnsemblPlants:AT4G26110.1 | TAIR:AT4G26110.1 | EMBL:AY054484 |
| EMBL:AY093283 | Unigene:At.349 | ProteinID:CAB39676.1 | ProteinID:CAB79466.1 | ncoils:Coil | GO:GO:0000724 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006334 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008283 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016444 | GO:GO:0030154 | GO:GO:0042393 | InterPro:NAP-like_sf |
| Symbol:NAP1;1 | InterPro:NAP_family | RefSeq:NP_194341.1 | PFAM:PF00956 | PO:PO:0000003 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR11875 | PANTHER:PTHR11875:SF101 | UniProt:Q9SZI2 | SUPFAM:SSF143113 | EMBL:U12858 | UniParc:UPI00000A6831 |
| SEG:seg | : | : | : | : | : |
Description
NAP1;1Nucleosome assembly protein 1;1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZI2]
Coordinates
chr4:+:13232568..13235908
Molecular Weight (calculated)
42999.4 Da
IEP (calculated)
4.113
GRAVY (calculated)
-1.110
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNDKDSFNV SDLTAALKDE DRAGLVNALK NKLQNLAGQR SDVLENLTPN VRKRVDALRD IQSQHDELEA KFREERAILE AKYQTLYQPL YVKRYEIVNG
101: TTEVELAPED DTKVDQGEEK TAEEKGVPSF WLTALKNNDV ISEEVTERDE GALKYLKDIK WCKIEEPKGF KLEFFFDTNP YFKNTVLTKS YHMIDEDEPL
201: LEKAMGTEID WYPGKCLTQK ILKKKPKKGS KNTKPITKLE DCESFFNFFS PPEVPDEDED IDEERAEDLQ NLMEQDYDIG STIREKIIPR AVSWFTGEAM
301: EAEDFEIDDD EEDDIDEDED EEDEEDEEDD DDEDEEESKT KKKPSIGNKK GGRSQIVGEG KQDERPPECK QQ
101: TTEVELAPED DTKVDQGEEK TAEEKGVPSF WLTALKNNDV ISEEVTERDE GALKYLKDIK WCKIEEPKGF KLEFFFDTNP YFKNTVLTKS YHMIDEDEPL
201: LEKAMGTEID WYPGKCLTQK ILKKKPKKGS KNTKPITKLE DCESFFNFFS PPEVPDEDED IDEERAEDLQ NLMEQDYDIG STIREKIIPR AVSWFTGEAM
301: EAEDFEIDDD EEDDIDEDED EEDEEDEEDD DDEDEEESKT KKKPSIGNKK GGRSQIVGEG KQDERPPECK QQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.