CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74770
CDX76841
CDX80568
CDX82688
CDX89363
CDX94372
CDY05521
CDY18894
CDY20281
CDY21663
CDY27353
CDY30379
CDY34801
CDY37071
CDY39693
CDY43252
CDY50005
CDY50468
CDY50472
CDY50473
CDY52429
CDY53659
CDY55504
CDY56346
CDY60738
CDY61114
CDY65997
CDY67089
CDY69060
CDY69405

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26110.1	CDX82688	AT2G19480.1	19228338
AT4G26110.1	CDY21663	AT2G19480.1	19228338
AT4G26110.1	CDY60738	AT2G19480.1	19228338
AT4G26110.1	CDY67089	AT2G19480.1	19228338
AT4G26110.1	CDY69405	AT2G19480.1	19228338
AT4G26110.1	CDX82688	AT2G19480.1	21798944
AT4G26110.1	CDY21663	AT2G19480.1	21798944
AT4G26110.1	CDY60738	AT2G19480.1	21798944
AT4G26110.1	CDY67089	AT2G19480.1	21798944
AT4G26110.1	CDY69405	AT2G19480.1	21798944
AT4G26110.1	CDX76841	AT2G24090.1	21798944
AT4G26110.1	CDY20281	AT2G24090.1	21798944
AT4G26110.1	CDY34801	AT2G24090.1	21798944
AT4G26110.1	CDY39693	AT2G24090.1	21798944
AT4G26110.1	CDY30379	AT2G43060.1	21798944
AT4G26110.1	CDY53659	AT2G43060.1	21798944
AT4G26110.1	CDY55504	AT2G43060.1	21798944
AT4G26110.1	CDY56346	AT2G43060.1	21798944
AT4G26110.1	CDX74770	AT2G45860.1	21798944
AT4G26110.1	CDY18894	AT2G45860.1	21798944
AT4G26110.1	CDY27353	AT2G45860.1	21798944
AT4G26110.1	CDY37071	AT2G45860.1	21798944
AT4G26110.1	CDY43252	AT3G02190.1	21798944
AT4G26110.1	CDX89363	AT4G26110.1	19228338
AT4G26110.1	CDX94372	AT4G26110.1	19228338
AT4G26110.1	CDY50005	AT4G26110.1	19228338
AT4G26110.1	CDY52429	AT4G26110.1	19228338
AT4G26110.1	CDY65997	AT4G26110.1	19228338
AT4G26110.1	CDX89363	AT4G26110.1	21798944
AT4G26110.1	CDX94372	AT4G26110.1	21798944
AT4G26110.1	CDY50005	AT4G26110.1	21798944
AT4G26110.1	CDY52429	AT4G26110.1	21798944
AT4G26110.1	CDY65997	AT4G26110.1	21798944
AT4G26110.1	CDX80568	AT5G26720.1	21798944
AT4G26110.1	CDY05521	AT5G26720.1	21798944
AT4G26110.1	CDY61114	AT5G26720.1	21798944
AT4G26110.1	CDY69060	AT5G26720.1	21798944
AT4G26110.1	CDY50468	AT5G56950.1	21798944
AT4G26110.1	CDY50472	AT5G56950.1	21798944
AT4G26110.1	CDY50473	AT5G56950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89363	Canola	nucleus	94.01	94.26
CDY50005	Canola	nucleus	78.2	81.77
AT4G26110.1	Thale cress	nucleus	81.74	80.65
CDY50468	Canola	nucleus	82.29	79.89
CDY50472	Canola	nucleus	80.38	78.88
CDY65997	Canola	nucleus	17.44	75.29
CDY50473	Canola	nucleus	38.42	75.0
CDY21663	Canola	nucleus	67.85	71.35
CDY67089	Canola	nucleus	71.12	69.6
VIT_09s0002g02330.t01	Wine grape	nucleus	72.21	69.55
CDX82688	Canola	nucleus	71.39	68.95
CDY69405	Canola	nucleus	69.48	68.55
KRH37411	Soybean	nucleus	67.85	68.22
PGSC0003DMT400055114	Potato	nucleus	69.48	68.18
CDY60738	Canola	nucleus	70.84	68.06
KRH12415	Soybean	endoplasmic reticulum	67.03	67.77
KRH19202	Soybean	nucleus	68.66	67.2
Solyc05g018810.2.1	Tomato	nucleus	68.39	66.76
Solyc12g008940.1.1	Tomato	nucleus	67.85	66.58
VIT_11s0016g02050.t01	Wine grape	nucleus	69.75	66.32
PGSC0003DMT400000751	Potato	nucleus	66.48	65.95
KRH02690	Soybean	nucleus	67.85	65.7
CDX97517	Canola	nucleus	43.6	57.97
CDY23642	Canola	nucleus	45.23	56.46
CDY52429	Canola	nucleus	34.33	42.57
CDX83813	Canola	cytosol	21.25	30.83
CDX96698	Canola	cytosol	20.98	30.43
CDY19242	Canola	cytosol	19.35	27.41
CDY26724	Canola	cytosol	18.26	26.48

Protein Annotations

MapMan:12.2.6	Gene3D:3.30.1120.90	GO:A0A078DZM8	EnsemblPlants:CDX94372	ProteinID:CDX94372	ProteinID:CDX94372.1
ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006334
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	EnsemblPlantsGene:GSBRNA2T00157491001	InterPro:NAP-like_sf	InterPro:NAP_family
PFAM:PF00956	PANTHER:PTHR11875	PANTHER:PTHR11875:SF101	SUPFAM:SSF143113	UniParc:UPI0004EC5B62	SEG:seg

Description

BnaC01g18120D

Coordinates

chrLK031881:-:563462..566179

Molecular Weight (calculated)

42414.7 Da

IEP (calculated)

4.097

GRAVY (calculated)

-1.129

Length

367 amino acids

Sequence
(BLAST)

001: MSNDKDSFNL ADLTAGLKDE DRAGLMNALK NELMAGQRSD VLESLTPQVR NRVEALKEIQ GKYDELEAKF REERAVLEAK YEMLYQPLYT KRYEIVNGIT
101: EVETTPEDTK MEQEGEKTAE EKGVPSFWLT ALKNNDVTSE EVTERDEEAL KYLKDIKWCK TEEPKGFKLE FFFDSNPYFK NAVLTKSYHM IDEDEPLLEK
201: AIGTEIDWYP GKCLTQKILK KKPKKGSNAK PITKMEDCES FFNFFNPPQV PEEDEDIDED KAEELQNLME QDYDIGSAIR EKIIPHAVSW FTGEAMEGEE
301: FDIDEEDEDE DDDIDEDEDE EDDEDEEDDE EDRKTRKKPS SGHKKGGRSQ VVGDGQQGER PPECKQQ

Best Arabidopsis Sequence Match ( AT4G26110.1 )
(BLAST)

001: MSNDKDSFNV SDLTAALKDE DRAGLVNALK NKLQNLAGQR SDVLENLTPN VRKRVDALRD IQSQHDELEA KFREERAILE AKYQTLYQPL YVKRYEIVNG
101: TTEVELAPED DTKVDQGEEK TAEEKGVPSF WLTALKNNDV ISEEVTERDE GALKYLKDIK WCKIEEPKGF KLEFFFDTNP YFKNTVLTKS YHMIDEDEPL
201: LEKAMGTEID WYPGKCLTQK ILKKKPKKGS KNTKPITKLE DCESFFNFFS PPEVPDEDED IDEERAEDLQ NLMEQDYDIG STIREKIIPR AVSWFTGEAM
301: EAEDFEIDDD EEDDIDEDED EEDEEDEEDD DDEDEEESKT KKKPSIGNKK GGRSQIVGEG KQDERPPECK QQ

Arabidopsis Description

NAP1;1Nucleosome assembly protein 1;1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZI2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.