Factsheet for VIT_09s0002g02330.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g06030.t01
VIT_09s0002g02330.t01
VIT_11s0016g02050.t01
VIT_11s0149g00220.t01
VIT_11s0149g00240.t01
VIT_14s0083g00970.t01
VIT_15s0046g02920.t01
VIT_16s0039g02160.t01
VIT_16s0115g00080.t01
VIT_16s0115g00310.t01
VIT_17s0000g05090.t01
VIT_17s0000g07580.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19480.1	VIT_16s0039g02160.t01	AT1G08580.1	21798944
AT2G19480.1	VIT_17s0000g07580.t01	AT1G19050.1	18642946
AT2G19480.1	VIT_09s0002g02330.t01	AT2G19480.1	19228338
AT2G19480.1	VIT_11s0016g02050.t01	AT2G19480.1	19228338
AT2G19480.1	VIT_15s0046g02920.t01	AT2G45860.1	21798944
AT2G19480.1	VIT_09s0002g02330.t01	AT4G26110.1	19228338
AT2G19480.1	VIT_11s0016g02050.t01	AT4G26110.1	19228338
AT2G19480.1	VIT_09s0002g02330.t01	AT5G56950.1	19228338
AT2G19480.1	VIT_11s0016g02050.t01	AT5G56950.1	19228338
AT4G26110.1	VIT_09s0002g02330.t01	AT2G19480.1	19228338
AT4G26110.1	VIT_11s0016g02050.t01	AT2G19480.1	19228338
AT4G26110.1	VIT_09s0002g02330.t01	AT2G19480.1	21798944
AT4G26110.1	VIT_11s0016g02050.t01	AT2G19480.1	21798944
AT4G26110.1	VIT_16s0115g00080.t01	AT2G24090.1	21798944
AT4G26110.1	VIT_16s0115g00310.t01	AT2G24090.1	21798944
AT4G26110.1	VIT_15s0046g02920.t01	AT2G45860.1	21798944
AT4G26110.1	VIT_04s0008g06030.t01	AT3G02190.1	21798944
AT4G26110.1	VIT_11s0149g00220.t01	AT3G02190.1	21798944
AT4G26110.1	VIT_11s0149g00240.t01	AT3G02190.1	21798944
AT4G26110.1	VIT_09s0002g02330.t01	AT4G26110.1	19228338
AT4G26110.1	VIT_11s0016g02050.t01	AT4G26110.1	19228338
AT4G26110.1	VIT_09s0002g02330.t01	AT4G26110.1	21798944
AT4G26110.1	VIT_11s0016g02050.t01	AT4G26110.1	21798944
AT4G26110.1	VIT_09s0002g02330.t01	AT5G56950.1	21798944
AT4G26110.1	VIT_11s0016g02050.t01	AT5G56950.1	21798944
AT4G26110.1	VIT_17s0000g05090.t01	AT5G60960.1	21297037
AT5G56950.1	VIT_09s0002g02330.t01	AT2G19480.1	19228338
AT5G56950.1	VIT_11s0016g02050.t01	AT2G19480.1	19228338
AT5G56950.1	VIT_09s0002g02330.t01	AT2G19480.1	19825649
AT5G56950.1	VIT_11s0016g02050.t01	AT2G19480.1	19825649
AT5G56950.1	VIT_15s0046g02920.t01	AT2G45860.1	21798944
AT5G56950.1	VIT_14s0083g00970.t01	AT2G47610.1	21798944
AT5G56950.1	VIT_04s0008g06030.t01	AT3G02190.1	21798944
AT5G56950.1	VIT_11s0149g00220.t01	AT3G02190.1	21798944
AT5G56950.1	VIT_11s0149g00240.t01	AT3G02190.1	21798944
AT5G56950.1	VIT_09s0002g02330.t01	AT4G26110.1	19228338
AT5G56950.1	VIT_11s0016g02050.t01	AT4G26110.1	19228338
AT5G56950.1	VIT_09s0002g02330.t01	AT5G56950.1	19228338
AT5G56950.1	VIT_11s0016g02050.t01	AT5G56950.1	19228338
AT5G56950.1	VIT_09s0002g02330.t01	AT5G56950.1	19825649
AT5G56950.1	VIT_11s0016g02050.t01	AT5G56950.1	19825649

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g02050.t01	Wine grape	nucleus	82.15	81.09
Solyc03g121700.2.1	Tomato	nucleus	78.48	80.38
PGSC0003DMT400006378	Potato	nucleus	52.23	79.28
CDY21663	Canola	nucleus	71.39	77.94
KRH23302	Soybean	nucleus	67.98	77.78
Bra036720.1-P	Field mustard	nucleus	75.07	77.51
KRH37411	Soybean	nucleus	74.02	77.26
GSMUA_Achr7P09020_001	Banana	nucleus	75.07	77.09
CDY67089	Canola	nucleus	75.85	77.07
CDY69405	Canola	nucleus	75.07	76.88
KRH12415	Soybean	endoplasmic reticulum	72.44	76.03
AT2G19480.1	Thale cress	nucleus	75.33	75.73
KRH10020	Soybean	nucleus	72.7	75.68
PGSC0003DMT400055114	Potato	nucleus	74.28	75.67
Solyc12g008940.1.1	Tomato	nucleus	74.28	75.67
PGSC0003DMT400000751	Potato	nucleus	73.23	75.41
Os05t0539700-01	Rice	nucleus	71.65	75.0
KRH19202	Soybean	nucleus	73.75	74.93
Bra040674.1-P	Field mustard	nucleus	73.75	74.73
GSMUA_Achr6P00890_001	Banana	nucleus	72.44	74.59
CDY60738	Canola	nucleus	74.54	74.35
CDX82688	Canola	nucleus	74.02	74.21
KRH02690	Soybean	nucleus	73.75	74.14
Solyc05g018810.2.1	Tomato	nucleus	72.7	73.67
Os06t0149400-01	Rice	nucleus	72.97	73.55
CDY50468	Canola	nucleus	72.7	73.28
AT5G56950.1	Thale cress	nucleus	71.92	73.26
TraesCS1B01G377000.1	Wheat	nucleus	69.03	73.26
CDX89363	Canola	nucleus	70.08	72.95
TraesCS1D01G364900.1	Wheat	nucleus	70.08	72.95
OQU75826	Sorghum	nucleus	72.7	72.7
Bra013951.1-P	Field mustard	nucleus	69.82	72.68
KXG22431	Sorghum	nucleus	71.13	72.46
Zm00001d045352_P002	Maize	extracellular, mitochondrion	72.18	72.37
AT4G26110.1	Thale cress	nucleus	70.6	72.31
CDX94372	Canola	nucleus	69.55	72.21
Zm00001d036177_P001	Maize	nucleus	69.29	71.93
Zm00001d038851_P001	Maize	extracellular, mitochondrion	69.82	71.89
CDY50472	Canola	nucleus	70.08	71.39
Bra031083.1-P	Field mustard	nucleus	70.87	71.24
GSMUA_AchrUn_...	Banana	nucleus	65.88	71.1
TraesCS7A01G102400.1	Wheat	nucleus	71.39	71.02
TraesCS4A01G401100.1	Wheat	nucleus	70.6	70.42
TraesCS7D01G096300.1	Wheat	nucleus	70.6	70.42
Os01t0711800-00	Rice	nucleus	54.33	69.7
CDY50473	Canola	nucleus	34.12	69.15
GSMUA_Achr2P16760_001	Banana	mitochondrion, nucleus	73.49	68.97
CDY50005	Canola	nucleus	63.52	68.95
Os06t0611700-00	Rice	nucleus	47.51	68.82
HORVU7Hr1G111180.1	Barley	cytosol	8.4	68.09
HORVU1Hr1G048890.1	Barley	nucleus	33.86	67.89
GSMUA_Achr10P...	Banana	endoplasmic reticulum	75.33	67.53
TraesCS1A01G360500.1	Wheat	nucleus	70.08	67.25
PGSC0003DMT400012517	Potato	nucleus	59.06	64.47
CDX97517	Canola	nucleus	45.67	63.04
Bra027399.1-P	Field mustard	nucleus	45.41	62.68
CDY23642	Canola	nucleus	48.03	62.24
HORVU1Hr1G080060.11	Barley	nucleus, plastid	66.93	61.89
Bra002778.1-P	Field mustard	nucleus	66.93	61.45
CDY65997	Canola	nucleus	13.65	61.18
Solyc06g062690.2.1	Tomato	nucleus	55.64	60.74
Os05t0235600-00	Rice	nucleus	19.68	60.0
Bra006957.1-P	Field mustard	nucleus	35.7	59.91
Solyc08g063000.2.1	Tomato	nucleus	55.12	59.66
PGSC0003DMT400021185	Potato	nucleus	50.66	59.02
HORVU1Hr1G018340.1	Barley	cytosol	4.46	58.62
AT3G13782.2	Thale cress	cytosol	47.51	57.1
HORVU7Hr1G064820.1	Barley	nucleus	12.34	55.29
HORVU7Hr1G064790.1	Barley	nucleus	12.34	55.29
Zm00001d011130_P002	Maize	nucleus	59.06	53.19
HORVU2Hr1G066940.1	Barley	nucleus	11.02	50.6
TraesCS3A01G357000.1	Wheat	mitochondrion	32.55	50.2
HORVU4Hr1G081230.2	Barley	nucleus	12.07	44.23
CDY52429	Canola	nucleus	31.23	40.2
VIT_17s0000g06030.t01	Wine grape	cytosol	20.21	28.73
VIT_14s0108g00510.t01	Wine grape	cytosol	18.37	28.46
HORVU2Hr1G033000.1	Barley	cytosol	14.44	22.63

Protein Annotations

EntrezGene:100261732	wikigene:100261732	MapMan:12.2.6	Gene3D:3.30.1120.90	ProteinID:CBI35962	ProteinID:CBI35962.3
UniProt:D7U016	EMBL:FN596494	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	EntrezGene:LOC100261732	wikigene:LOC100261732
InterPro:NAP-like_sf	InterPro:NAP_family	PFAM:PF00956	PANTHER:PTHR11875	PANTHER:PTHR11875:SF101	SUPFAM:SSF143113
TIGR:TC56925	UniParc:UPI0001BE4B7D	ArrayExpress:VIT_09s0002g02330	EnsemblPlantsGene:VIT_09s0002g02330	EnsemblPlants:VIT_09s0002g02330.t01	unigene:Vvi.6263
RefSeq:XP_002280211	RefSeq:XP_002280211.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr9:-:2137581..2142296

Molecular Weight (calculated)

43631.8 Da

IEP (calculated)

4.077

GRAVY (calculated)

-1.076

Length

381 amino acids

Sequence
(BLAST)

001: MSNDKDQFNI ADLGAALPAA AAALSAEDRA GLVNALKNKL QNLAGQHSDV LETLSPNVRK RVEFLREIQG QHDELEAKFF EERAALEAKY QKLYEPLYTK
101: RYEIVNGVVE VEGVTNEAPM DQEEDKATEE KGVPNFWLTA MKTNEVLAEE ISERDEGALK YLKDIKWYRI DNPKGFKLEF YFDANPYFKN SILTKTYHMI
201: DDDEPILEKA IGTEIEWYPG KSLTQKLLKK KPRKGSKNAK PITKTENCES FFNFFNPPQV PEDEEDIDED VAEELQNQME QDYDIGSTIR DKIIPHAVSW
301: FTGEAVQGDE FEDIEDDDDE DGDDEDEEDE EDEDEEEDDE DEDEEEEDKS RKKTSTGPKK SGRSRAGEGQ LGERPPECKQ Q

Best Arabidopsis Sequence Match ( AT2G19480.3 )
(BLAST)

001: MSNDKDSMNM SDLSTALNEE DRAGLVNALK NKLQNLAGQH SDVLENLTPP VRKRVEFLRE IQNQYDEMEA KFFEERAALE AKYQKLYQPL YTKRYEIVNG
101: VVEVEGAAEE VKSEQGEDKS AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY FKNTVLTKTY HMIDEDEPIL
201: EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE
301: ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KAGRSQLAEG QAGERPPECK QQ

Arabidopsis Description

NAP1;2Nucleosome assembly protein 1;2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.