Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_09s0002g02330.t01 | |
| VIT_11s0016g02050.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G08580.1 | VIT_09s0002g02330.t01 | AT5G56950.1 | 21798944 |
| AT1G08580.1 | VIT_11s0016g02050.t01 | AT5G56950.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH56501 | Soybean | nucleus | 60.47 | 62.4 |
| KRG93167 | Soybean | nucleus | 60.47 | 62.4 |
| GSMUA_Achr7P04750_001 | Banana | cytosol | 51.94 | 60.36 |
| Solyc03g096960.2.1 | Tomato | nucleus | 55.81 | 55.81 |
| PGSC0003DMT400001524 | Potato | nucleus | 54.26 | 54.26 |
| CDX93551 | Canola | nucleus | 51.94 | 54.03 |
| Bra018613.1-P | Field mustard | nucleus | 51.16 | 53.66 |
| AT1G08580.1 | Thale cress | nucleus | 51.16 | 53.66 |
| CDX95048 | Canola | nucleus | 51.16 | 52.8 |
| Bra031633.1-P | Field mustard | nucleus | 50.39 | 52.42 |
| CDY06320 | Canola | nucleus | 49.61 | 51.61 |
| CDY22675 | Canola | nucleus | 48.84 | 50.81 |
| Os02t0604100-01 | Rice | nucleus | 49.61 | 49.61 |
| KXG30583 | Sorghum | nucleus | 48.06 | 48.44 |
| TraesCS6A01G217300.1 | Wheat | nucleus | 44.19 | 44.19 |
| TraesCS6B01G245400.1 | Wheat | nucleus | 44.19 | 44.19 |
| TraesCS6D01G198100.1 | Wheat | nucleus | 44.19 | 44.19 |
| Zm00001d017141_P001 | Maize | nucleus | 44.19 | 44.19 |
Protein Annotations
| ArrayExpress:VIT_16s0039g02160 | EMBL:FN595750 | EnsemblPlants:VIT_16s0039g02160.t01 | EnsemblPlantsGene:VIT_16s0039g02160 | EntrezGene:100854498 | EntrezGene:LOC100854498 |
| PANTHER:PTHR36709 | ProteinID:CBI26529 | ProteinID:CBI26529.3 | RefSeq:XP_003634010 | RefSeq:XP_003634010.1 | SEG:seg |
| TIGR:TC64694 | unigene:Vvi.6649 | UniParc:UPI0001BE2A8C | UniProt:D7T7Q8 | wikigene:100854498 | wikigene:LOC100854498 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr16:-:2214509..2217703
Molecular Weight (calculated)
14763.1 Da
IEP (calculated)
11.507
GRAVY (calculated)
-1.152
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKFNVVQKR RRAEKAQRKR AIHGDPVSAK LKNKPQPLSL SGKRKRKLFK RWRREQKEAL EKGIVSMEDV EMAVSQGTSE ETNKNSTKFN LKKSVKLKHL
101: KRKGSRGKNK IKPSKQAAAE VPVEDAMVE
101: KRKGSRGKNK IKPSKQAAAE VPVEDAMVE
001: MAKYNEIAKK KREAKADRKR AIHGDPLTNK LKTRTPVPSV SGKRQRKLLR KWRREQKDMV EKGLVTMEDV EMASAQAASE DSKKSPRKFS VKKSLKLNKL
101: NNKGKKKKNQ KASGEKSADC MLE
101: NNKGKKKKNQ KASGEKSADC MLE
Arabidopsis Description
At1g08580 [Source:UniProtKB/TrEMBL;Acc:Q9FRS7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.