Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra002778.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G08580.1 | Bra002778.1-P | AT5G56950.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06320 | Canola | nucleus | 95.16 | 95.16 |
| Bra018613.1-P | Field mustard | nucleus | 87.1 | 87.8 |
| AT1G08580.1 | Thale cress | nucleus | 83.06 | 83.74 |
| GSMUA_Achr7P04750_001 | Banana | cytosol | 49.19 | 54.95 |
| Solyc03g096960.2.1 | Tomato | nucleus | 54.03 | 51.94 |
| PGSC0003DMT400001524 | Potato | nucleus | 53.23 | 51.16 |
| VIT_16s0039g02160.t01 | Wine grape | nucleus | 52.42 | 50.39 |
| KRG93167 | Soybean | nucleus | 50.0 | 49.6 |
| Os02t0604100-01 | Rice | nucleus | 50.81 | 48.84 |
| KRH56501 | Soybean | nucleus | 49.19 | 48.8 |
| TraesCS6B01G245400.1 | Wheat | nucleus | 48.39 | 46.51 |
| KXG30583 | Sorghum | nucleus | 47.58 | 46.09 |
| TraesCS6A01G217300.1 | Wheat | nucleus | 47.58 | 45.74 |
| TraesCS6D01G198100.1 | Wheat | nucleus | 47.58 | 45.74 |
| Zm00001d017141_P001 | Maize | nucleus | 47.58 | 45.74 |
Protein Annotations
Description
AT1G08580 (E=1e-020) | unknown protein
Coordinates
chrA09:+:35479927..35480630
Molecular Weight (calculated)
14080.3 Da
IEP (calculated)
11.106
GRAVY (calculated)
-1.214
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKYNEIAKK KREAKADRKR AIHGDPLTNK LKTRAPVVAV SGKRQKKLLR KWRREQKEMV EKGLVSMEDV EMASADAGSE DSKKPTRKFS VKKTIKLNKL
101: KNKGNKKKSQ KAGGKEVSTD QMLE
101: KNKGNKKKSQ KAGGKEVSTD QMLE
001: MAKYNEIAKK KREAKADRKR AIHGDPLTNK LKTRTPVPSV SGKRQRKLLR KWRREQKDMV EKGLVTMEDV EMASAQAASE DSKKSPRKFS VKKSLKLNKL
101: NNKGKKKKNQ KASGEKSADC MLE
101: NNKGKKKKNQ KASGEKSADC MLE
Arabidopsis Description
At1g08580 [Source:UniProtKB/TrEMBL;Acc:Q9FRS7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.