Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc05g018810.2.1 | |
| Solyc12g008940.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G08580.1 | Solyc05g018810.2.1 | AT5G56950.1 | 21798944 |
| AT1G08580.1 | Solyc12g008940.1.1 | AT5G56950.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400001524 | Potato | nucleus | 93.8 | 93.8 |
| KRH56501 | Soybean | nucleus | 60.47 | 62.4 |
| KRG93167 | Soybean | nucleus | 60.47 | 62.4 |
| GSMUA_Achr7P04750_001 | Banana | cytosol | 52.71 | 61.26 |
| VIT_16s0039g02160.t01 | Wine grape | nucleus | 55.81 | 55.81 |
| Bra031633.1-P | Field mustard | nucleus | 51.94 | 54.03 |
| Bra018613.1-P | Field mustard | nucleus | 50.39 | 52.85 |
| AT1G08580.1 | Thale cress | nucleus | 50.39 | 52.85 |
| CDY22675 | Canola | nucleus | 50.39 | 52.42 |
| CDY06320 | Canola | nucleus | 50.39 | 52.42 |
| CDX93551 | Canola | nucleus | 50.39 | 52.42 |
| CDX95048 | Canola | nucleus | 48.06 | 49.6 |
| Os02t0604100-01 | Rice | nucleus | 47.29 | 47.29 |
| TraesCS6B01G245400.1 | Wheat | nucleus | 47.29 | 47.29 |
| KXG30583 | Sorghum | nucleus | 46.51 | 46.88 |
| TraesCS6A01G217300.1 | Wheat | nucleus | 46.51 | 46.51 |
| TraesCS6D01G198100.1 | Wheat | nucleus | 46.51 | 46.51 |
| Zm00001d017141_P001 | Maize | nucleus | 42.64 | 42.64 |
Protein Annotations
| EnsemblPlants:Solyc03g096960.2.1 | EnsemblPlantsGene:Solyc03g096960.2 | PANTHER:PTHR36709 | SEG:seg | UniParc:UPI0002767FCB | UniProt:K4BJB4 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3:+:59337151..59339180
Molecular Weight (calculated)
14841.3 Da
IEP (calculated)
11.328
GRAVY (calculated)
-1.219
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKFNEVQKK RRAIISESKR ARHGDPNTRK LKQKVQPLAI SGKRKRKLFK KWRREQKEAV EKGVITMEDV EMAVADAAEG KTQDSNKAHV KFPMKKSSKL
101: KMKQLKKKGK SKRKSVKQAT ESSTDAMME
101: KMKQLKKKGK SKRKSVKQAT ESSTDAMME
001: MAKYNEIAKK KREAKADRKR AIHGDPLTNK LKTRTPVPSV SGKRQRKLLR KWRREQKDMV EKGLVTMEDV EMASAQAASE DSKKSPRKFS VKKSLKLNKL
101: NNKGKKKKNQ KASGEKSADC MLE
101: NNKGKKKKNQ KASGEKSADC MLE
Arabidopsis Description
At1g08580 [Source:UniProtKB/TrEMBL;Acc:Q9FRS7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.