Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G08580.1 | CDY50468 | AT5G56950.1 | 21798944 |
| AT1G08580.1 | CDY50472 | AT5G56950.1 | 21798944 |
| AT1G08580.1 | CDY50473 | AT5G56950.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93551 | Canola | nucleus | 92.8 | 93.55 |
| CDY22675 | Canola | nucleus | 87.2 | 87.9 |
| CDY06320 | Canola | nucleus | 84.8 | 85.48 |
| AT1G08580.1 | Thale cress | nucleus | 81.6 | 82.93 |
| GSMUA_Achr7P04750_001 | Banana | cytosol | 52.0 | 58.56 |
| VIT_16s0039g02160.t01 | Wine grape | nucleus | 52.8 | 51.16 |
| KRG93167 | Soybean | nucleus | 50.4 | 50.4 |
| Os02t0604100-01 | Rice | nucleus | 49.6 | 48.06 |
| PGSC0003DMT400001524 | Potato | nucleus | 49.6 | 48.06 |
| Solyc03g096960.2.1 | Tomato | nucleus | 49.6 | 48.06 |
| KRH56501 | Soybean | nucleus | 48.0 | 48.0 |
| KXG30583 | Sorghum | nucleus | 44.8 | 43.75 |
| Zm00001d017141_P001 | Maize | nucleus | 44.8 | 43.41 |
| TraesCS6A01G217300.1 | Wheat | nucleus | 44.0 | 42.64 |
| TraesCS6B01G245400.1 | Wheat | nucleus | 44.0 | 42.64 |
| TraesCS6D01G198100.1 | Wheat | nucleus | 43.2 | 41.86 |
Protein Annotations
| EnsemblPlants:CDX95048 | EnsemblPlantsGene:GSBRNA2T00100568001 | PANTHER:PTHR36709 | ProteinID:CDX95048 | ProteinID:CDX95048.1 | SEG:seg |
| UniParc:UPI0004EEDB1A | MapMan:35.2 | : | : | : | : |
Description
BnaC05g06230D
Coordinates
chrLK031886:+:880005..881106
Molecular Weight (calculated)
14203.5 Da
IEP (calculated)
11.084
GRAVY (calculated)
-1.163
Length
125 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKYNEIAKK KREAKADRKR AIHGDPLTNK LKSRAPVVSV SGKRQKKLLR KWRREQKEMV EKGLVTMEDV EMASADGASE EESKKPPRKF SVKKTLKLNK
101: LKNKAGKKNK SQKAVGQVSA EQMLE
101: LKNKAGKKNK SQKAVGQVSA EQMLE
001: MAKYNEIAKK KREAKADRKR AIHGDPLTNK LKTRTPVPSV SGKRQRKLLR KWRREQKDMV EKGLVTMEDV EMASAQAASE DSKKSPRKFS VKKSLKLNKL
101: NNKGKKKKNQ KASGEKSADC MLE
101: NNKGKKKKNQ KASGEKSADC MLE
Arabidopsis Description
At1g08580 [Source:UniProtKB/TrEMBL;Acc:Q9FRS7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.