Factsheet for VIT_11s0149g00220.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_09s0002g02330.t01
VIT_11s0016g02050.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25210.1	VIT_09s0002g02330.t01	AT4G26110.1	21798944
AT2G25210.1	VIT_11s0016g02050.t01	AT4G26110.1	21798944
AT2G25210.1	VIT_09s0002g02330.t01	AT5G56950.1	21798944
AT2G25210.1	VIT_11s0016g02050.t01	AT5G56950.1	21798944
AT4G31985.1	VIT_09s0002g02330.t01	AT4G26110.1	21798944
AT4G31985.1	VIT_11s0016g02050.t01	AT4G26110.1	21798944
AT4G31985.1	VIT_09s0002g02330.t01	AT5G56950.1	21798944
AT4G31985.1	VIT_11s0016g02050.t01	AT5G56950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P15810_001	Banana	cytosol	58.33	100.0
Os02t0797200-01	Rice	cytosol	81.67	96.08
Zm00001d045121_P001	Maize	cytosol	81.67	96.08
Os06t0181566-01	Rice	plastid	81.67	96.08
Zm00001d018383_P002	Maize	cytosol	81.67	96.08
KRH61699	Soybean	cytosol	81.67	96.08
PGSC0003DMT400003718	Potato	cytosol	81.67	96.08
KRH52367	Soybean	cytosol	81.67	96.08
EES05958	Sorghum	cytosol	81.67	96.08
KRH37867	Soybean	cytosol	81.67	96.08
KRH12895	Soybean	cytosol	81.67	96.08
Os02t0796900-00	Rice	cytosol	80.0	96.0
AT2G25210.1	Thale cress	cytosol	70.0	95.45
Solyc07g005050.2.1	Tomato	cytosol	80.0	94.12
AT4G31985.1	Thale cress	cytosol	80.0	94.12
Bra032033.1-P	Field mustard	cytosol	80.0	92.31
TraesCS6A01G360400.1	Wheat	cytosol	78.33	92.16
TraesCS6B01G393300.1	Wheat	cytosol	78.33	92.16
TraesCS6D01G343900.1	Wheat	cytosol	78.33	92.16
TraesCS7A01G145700.1	Wheat	cytosol	78.33	92.16
TraesCS7D01G147000.1	Wheat	cytosol	78.33	92.16
CDY43252	Canola	cytosol	51.67	88.57
AT3G02190.1	Thale cress	cytosol	75.0	88.24
Bra039161.1-P	Field mustard	cytosol	75.0	88.24
KRH52368	Soybean	cytosol	80.0	87.27
Bra023970.1-P	Field mustard	cytosol	78.33	85.45
Bra040064.1-P	Field mustard	cytosol	81.67	75.38
VIT_04s0008g06030.t01	Wine grape	cytosol	81.67	73.13
GSMUA_Achr3P13390_001	Banana	cytosol	83.33	68.49
Zm00001d035838_P001	Maize	extracellular	80.0	66.67
HORVU0Hr1G017360.1	Barley	mitochondrion	80.0	65.75
CDY62505	Canola	cytosol, plastid	83.33	64.1
VIT_11s0149g00240.t01	Wine grape	cytosol	83.33	64.1
Solyc12g010350.1.1	Tomato	nucleus, unclear	80.0	56.47
GSMUA_Achr7P19310_001	Banana	cytosol	83.33	56.18
Zm00001d052025_P001	Maize	mitochondrion	83.33	51.55
HORVU7Hr1G029860.1	Barley	plastid	80.0	39.02
OQU75968	Sorghum	cytosol	80.0	29.45

Protein Annotations

Gene3D:1.10.1620.10	EntrezGene:100247501	wikigene:100247501	MapMan:17.1.2.1.42	ProteinID:CCB49954	ProteinID:CCB49954.1
UniProt:F6HCK9	EMBL:FN595516	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:IPR023626	EntrezGene:LOC100247501	wikigene:LOC100247501
HAMAP:MF_00629	PFAM:PD007914	PFAM:PF00832	ScanProsite:PS00051	PANTHER:PTHR19970	PANTHER:PTHR19970:SF13
InterPro:Ribosomal_L39	InterPro:Ribosomal_L39_CS	InterPro:Ribosomal_L39e_dom_sf	SUPFAM:SSF48662	TIGR:TC66634	UniParc:UPI00021092A0
ArrayExpress:VIT_11s0149g00220	EnsemblPlantsGene:VIT_11s0149g00220	EnsemblPlants:VIT_11s0149g00220.t01	RefSeq:XP_003633157	RefSeq:XP_003633157.1	:

Description

No Description!

Coordinates

chr11:-:7108598..7114040

Molecular Weight (calculated)

7436.5 Da

IEP (calculated)

12.882

GRAVY (calculated)

-1.003

Length

60 amino acids

Sequence
(BLAST)

1: MNFVVGGRLM PSHKTFMIKK KLAKKMRQNR PIPHWIRMRT DNTIRYNAKR RHWRRTKLGF

Best Arabidopsis Sequence Match ( AT4G31985.1 )
(BLAST)

1: MPSHKSFMIK KKLGKKMRQN RPIPHWIRLR TDNTIRYNAK RRHWRRTKLG F

Arabidopsis Description

RPL39C60S ribosomal protein L39-1 [Source:UniProtKB/Swiss-Prot;Acc:P51424]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.