Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43252 | Canola | cytosol | 66.67 | 97.14 |
| AT4G31985.1 | Thale cress | cytosol | 94.12 | 94.12 |
| Bra039161.1-P | Field mustard | cytosol | 94.12 | 94.12 |
| AT2G25210.1 | Thale cress | cytosol | 80.39 | 93.18 |
| GSMUA_Achr1P15810_001 | Banana | cytosol | 60.78 | 88.57 |
| Solyc07g005050.2.1 | Tomato | cytosol | 88.24 | 88.24 |
| Os02t0797200-01 | Rice | cytosol | 86.27 | 86.27 |
| Zm00001d045121_P001 | Maize | cytosol | 86.27 | 86.27 |
| Zm00001d018383_P002 | Maize | cytosol | 86.27 | 86.27 |
| Os06t0181566-01 | Rice | plastid | 86.27 | 86.27 |
| KRH61699 | Soybean | cytosol | 86.27 | 86.27 |
| KRH52367 | Soybean | cytosol | 86.27 | 86.27 |
| KRH37867 | Soybean | cytosol | 86.27 | 86.27 |
| KRH12895 | Soybean | cytosol | 86.27 | 86.27 |
| EES05958 | Sorghum | cytosol | 86.27 | 86.27 |
| Os02t0796900-00 | Rice | cytosol | 84.31 | 86.0 |
| TraesCS7D01G147000.1 | Wheat | cytosol | 82.35 | 82.35 |
| TraesCS7A01G145700.1 | Wheat | cytosol | 82.35 | 82.35 |
| TraesCS6D01G343900.1 | Wheat | cytosol | 82.35 | 82.35 |
| TraesCS6B01G393300.1 | Wheat | cytosol | 82.35 | 82.35 |
| TraesCS6A01G360400.1 | Wheat | cytosol | 82.35 | 82.35 |
| KRH52368 | Soybean | cytosol | 84.31 | 78.18 |
| VIT_11s0149g00220.t01 | Wine grape | mitochondrion | 88.24 | 75.0 |
| VIT_04s0008g06030.t01 | Wine grape | cytosol | 84.31 | 64.18 |
| GSMUA_Achr3P13390_001 | Banana | cytosol | 86.27 | 60.27 |
| Zm00001d035838_P001 | Maize | extracellular | 84.31 | 59.72 |
| HORVU0Hr1G017360.1 | Barley | mitochondrion | 82.35 | 57.53 |
| PGSC0003DMT400030914 | Potato | cytosol, golgi, mitochondrion, vacuole | 64.71 | 56.9 |
| VIT_11s0149g00240.t01 | Wine grape | cytosol | 86.27 | 56.41 |
| Solyc12g010350.1.1 | Tomato | nucleus, unclear | 88.24 | 52.94 |
| GSMUA_Achr7P19310_001 | Banana | cytosol | 86.27 | 49.44 |
| Zm00001d052025_P001 | Maize | mitochondrion | 86.27 | 45.36 |
| HORVU7Hr1G029860.1 | Barley | plastid | 82.35 | 34.15 |
| OQU75968 | Sorghum | cytosol | 84.31 | 26.38 |
Protein Annotations
| Gene3D:1.10.1620.10 | MapMan:17.1.2.1.42 | EntrezGene:820350 | UniProt:A0A178VBT5 | ProteinID:AAF02118.1 | EMBL:AC011664 |
| ProteinID:AEE73776.1 | EMBL:AK118748 | ArrayExpress:AT3G02190 | EnsemblPlantsGene:AT3G02190 | RefSeq:AT3G02190 | TAIR:AT3G02190 |
| RefSeq:AT3G02190-TAIR-G | EnsemblPlants:AT3G02190.1 | TAIR:AT3G02190.1 | EMBL:AY088763 | EMBL:BT004930 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022625 |
| GO:GO:0030529 | InterPro:IPR023626 | HAMAP:MF_00629 | RefSeq:NP_566167.1 | ProteinID:OAP03158.1 | PFAM:PD007914 |
| PFAM:PF00832 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00051 | PANTHER:PTHR19970 | PANTHER:PTHR19970:SF13 | UniProt:Q8L8W6 |
| InterPro:Ribosomal_L39 | InterPro:Ribosomal_L39_CS | InterPro:Ribosomal_L39e_dom_sf | SUPFAM:SSF48662 | UniParc:UPI000000C50E | : |
Description
RPL39B60S ribosomal protein L39-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8W6]
Coordinates
chr3:-:405756..406487
Molecular Weight (calculated)
6420.1 Da
IEP (calculated)
12.820
GRAVY (calculated)
-1.416
Length
51 amino acids
Sequence
(BLAST)
(BLAST)
1: MPSHKSFMIK KKLGKKMRQN RPIPNWIRLR TDNKIRYNAK RRHWRRTKLG F
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.