Factsheet for Solyc07g005050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g018810.2.1
Solyc12g008940.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25210.1	Solyc05g018810.2.1	AT4G26110.1	21798944
AT2G25210.1	Solyc12g008940.1.1	AT4G26110.1	21798944
AT2G25210.1	Solyc05g018810.2.1	AT5G56950.1	21798944
AT2G25210.1	Solyc12g008940.1.1	AT5G56950.1	21798944
AT4G31985.1	Solyc05g018810.2.1	AT4G26110.1	21798944
AT4G31985.1	Solyc12g008940.1.1	AT4G26110.1	21798944
AT4G31985.1	Solyc05g018810.2.1	AT5G56950.1	21798944
AT4G31985.1	Solyc12g008940.1.1	AT5G56950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P15810_001	Banana	cytosol	64.71	94.29
TraesCS7A01G145700.1	Wheat	cytosol	94.12	94.12
Os02t0797200-01	Rice	cytosol	94.12	94.12
Os06t0181566-01	Rice	plastid	94.12	94.12
KRH61699	Soybean	cytosol	94.12	94.12
KRH52367	Soybean	cytosol	94.12	94.12
KRH37867	Soybean	cytosol	94.12	94.12
KRH12895	Soybean	cytosol	94.12	94.12
TraesCS6A01G360400.1	Wheat	cytosol	94.12	94.12
TraesCS6B01G393300.1	Wheat	cytosol	94.12	94.12
TraesCS6D01G343900.1	Wheat	cytosol	94.12	94.12
EES05958	Sorghum	cytosol	94.12	94.12
TraesCS7D01G147000.1	Wheat	cytosol	94.12	94.12
Zm00001d018383_P002	Maize	cytosol	94.12	94.12
Zm00001d045121_P001	Maize	cytosol	94.12	94.12
Os02t0796900-00	Rice	cytosol	92.16	94.0
AT4G31985.1	Thale cress	cytosol	92.16	92.16
AT2G25210.1	Thale cress	cytosol	78.43	90.91
Bra032033.1-P	Field mustard	cytosol	92.16	90.38
AT3G02190.1	Thale cress	cytosol	88.24	88.24
Bra023970.1-P	Field mustard	cytosol	94.12	87.27
CDY43252	Canola	cytosol	58.82	85.71
KRH52368	Soybean	cytosol	92.16	85.45
Bra039161.1-P	Field mustard	cytosol	84.31	84.31
VIT_11s0149g00220.t01	Wine grape	mitochondrion	94.12	80.0
Bra040064.1-P	Field mustard	cytosol	94.12	73.85
VIT_04s0008g06030.t01	Wine grape	cytosol	90.2	68.66
HORVU0Hr1G017360.1	Barley	mitochondrion	94.12	65.75
Zm00001d035838_P001	Maize	extracellular	92.16	65.28
GSMUA_Achr3P13390_001	Banana	cytosol	92.16	64.38
CDY62505	Canola	cytosol, plastid	94.12	61.54
VIT_11s0149g00240.t01	Wine grape	cytosol	92.16	60.26
Solyc12g010350.1.1	Tomato	nucleus, unclear	100.0	60.0
GSMUA_Achr7P19310_001	Banana	cytosol	92.16	52.81
Zm00001d052025_P001	Maize	mitochondrion	94.12	49.48
HORVU7Hr1G029860.1	Barley	plastid	94.12	39.02
OQU75968	Sorghum	cytosol	92.16	28.83

Protein Annotations

Gene3D:1.10.1620.10	MapMan:17.1.2.1.42	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:IPR023626	UniProt:K4CAX7	HAMAP:MF_00629
PFAM:PD007914	PFAM:PF00832	ScanProsite:PS00051	PANTHER:PTHR19970	PANTHER:PTHR19970:SF13	InterPro:Ribosomal_L39
InterPro:Ribosomal_L39_CS	InterPro:Ribosomal_L39e_dom_sf	SUPFAM:SSF48662	EnsemblPlantsGene:Solyc07g005050.2	EnsemblPlants:Solyc07g005050.2.1	UniParc:UPI000276BBC4

Description

No Description!

Coordinates

chr7:-:101157..103579

Molecular Weight (calculated)

6471.1 Da

IEP (calculated)

12.621

GRAVY (calculated)

-1.410

Length

51 amino acids

Sequence
(BLAST)

1: MPSHKSFMIK KKLAKKQRQN RPIPYWIRMR TDNTIRYNAK RRHWRRTKLG F

Best Arabidopsis Sequence Match ( AT4G31985.1 )
(BLAST)

1: MPSHKSFMIK KKLGKKMRQN RPIPHWIRLR TDNTIRYNAK RRHWRRTKLG F

Arabidopsis Description

RPL39C60S ribosomal protein L39-1 [Source:UniProtKB/Swiss-Prot;Acc:P51424]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.