CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0796900-00	Rice	cytosol	30.67	100.0
Os02t0797200-01	Rice	cytosol	30.67	98.04
KRH61699	Soybean	cytosol	30.67	98.04
KRH52367	Soybean	cytosol	30.67	98.04
KRH37867	Soybean	cytosol	30.67	98.04
KRH12895	Soybean	cytosol	30.67	98.04
EES05958	Sorghum	cytosol	30.67	98.04
GSMUA_Achr1P15810_001	Banana	cytosol	20.86	97.14
TraesCS6B01G393300.1	Wheat	cytosol	29.45	94.12
PGSC0003DMT400003718	Potato	cytosol	29.45	94.12
TraesCS6A01G360400.1	Wheat	cytosol	29.45	94.12
TraesCS6D01G343900.1	Wheat	cytosol	29.45	94.12
TraesCS7A01G145700.1	Wheat	cytosol	29.45	94.12
TraesCS7D01G147000.1	Wheat	cytosol	29.45	94.12
Solyc07g005050.2.1	Tomato	cytosol	28.83	92.16
KRH52368	Soybean	cytosol	30.67	90.91
AT2G25210.1	Thale cress	cytosol	24.54	90.91
Bra032033.1-P	Field mustard	cytosol	28.83	90.38
CDY43252	Canola	cytosol	19.02	88.57
AT4G31985.1	Thale cress	cytosol	27.61	88.24
Bra039161.1-P	Field mustard	cytosol	26.99	86.27
Zm00001d035838_P001	Maize	extracellular	38.04	86.11
AT3G02190.1	Thale cress	cytosol	26.38	84.31
Bra023970.1-P	Field mustard	cytosol	28.22	83.64
VIT_11s0149g00220.t01	Wine grape	mitochondrion	29.45	80.0
VIT_04s0008g06030.t01	Wine grape	cytosol	29.45	71.64
Bra040064.1-P	Field mustard	cytosol	28.22	70.77
GSMUA_Achr3P13390_001	Banana	cytosol	31.29	69.86
HORVU0Hr1G017360.1	Barley	mitochondrion	30.06	67.12
VIT_11s0149g00240.t01	Wine grape	cytosol	29.45	61.54
CDY62505	Canola	cytosol, plastid	28.22	58.97
Solyc12g010350.1.1	Tomato	nucleus, unclear	30.06	57.65
HORVU7Hr1G029860.1	Barley	plastid	31.9	42.28

Protein Annotations

Gene3D:1.10.1620.10	MapMan:17.1.2.1.42	UniProt:A0A1W0VRQ7	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR023626
EnsemblPlants:OQU75968	ProteinID:OQU75968	ProteinID:OQU75968.1	PFAM:PD007914	PFAM:PF00832	ScanProsite:PS00051
PANTHER:PTHR19970	PANTHER:PTHR19970:SF13	InterPro:Ribosomal_L39	InterPro:Ribosomal_L39_CS	InterPro:Ribosomal_L39e_dom_sf	EnsemblPlantsGene:SORBI_3010G063801
SUPFAM:SSF48662	UniParc:UPI0009DC8D37	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:5037448..5038706

Molecular Weight (calculated)

18329.6 Da

IEP (calculated)

12.165

GRAVY (calculated)

-0.653

Length

163 amino acids

Sequence
(BLAST)

001: MGKVASGCAR AAVGRAREVA SGGGALADAG EGDDGSQMPV CGAGGVRPLD LSHPAKGFLR RRRCCFRRLR PPKPWYVSPT FALKLSDSCA TRGVPRRSYA
101: LCRRVALRPV PAQPSHKTFR IKKKLAKKMR QNRPIPYWIR MRTDNTIRYN AKRRHWRRTK LGF

Best Arabidopsis Sequence Match ( AT4G31985.1 )
(BLAST)

1: MPSHKSFMIK KKLGKKMRQN RPIPHWIRLR TDNTIRYNAK RRHWRRTKLG F

Arabidopsis Description

RPL39C60S ribosomal protein L39-1 [Source:UniProtKB/Swiss-Prot;Acc:P51424]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.