Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G147000.1 | Wheat | cytosol | 41.46 | 100.0 |
| TraesCS7A01G145700.1 | Wheat | cytosol | 41.46 | 100.0 |
| Zm00001d045121_P001 | Maize | cytosol | 39.84 | 96.08 |
| PGSC0003DMT400003718 | Potato | cytosol | 39.84 | 96.08 |
| Os02t0797200-01 | Rice | cytosol | 39.84 | 96.08 |
| KRH61699 | Soybean | cytosol | 39.84 | 96.08 |
| KRH52367 | Soybean | cytosol | 39.84 | 96.08 |
| KRH37867 | Soybean | cytosol | 39.84 | 96.08 |
| KRH12895 | Soybean | cytosol | 39.84 | 96.08 |
| Os02t0796900-00 | Rice | cytosol | 39.02 | 96.0 |
| GSMUA_Achr1P15810_001 | Banana | cytosol | 26.83 | 94.29 |
| Solyc07g005050.2.1 | Tomato | cytosol | 39.02 | 94.12 |
| KRH52368 | Soybean | cytosol | 39.84 | 89.09 |
| AT2G25210.1 | Thale cress | cytosol | 30.89 | 86.36 |
| AT4G31985.1 | Thale cress | cytosol | 35.77 | 86.27 |
| CDY43252 | Canola | cytosol | 24.39 | 85.71 |
| Bra032033.1-P | Field mustard | cytosol | 35.77 | 84.62 |
| Bra039161.1-P | Field mustard | cytosol | 34.96 | 84.31 |
| AT3G02190.1 | Thale cress | cytosol | 34.15 | 82.35 |
| Bra023970.1-P | Field mustard | cytosol | 36.59 | 81.82 |
| VIT_11s0149g00220.t01 | Wine grape | mitochondrion | 39.02 | 80.0 |
| HORVU0Hr1G017360.1 | Barley | mitochondrion | 46.34 | 78.08 |
| Bra040064.1-P | Field mustard | cytosol | 36.59 | 69.23 |
| VIT_04s0008g06030.t01 | Wine grape | cytosol | 37.4 | 68.66 |
| Zm00001d035838_P001 | Maize | extracellular | 39.84 | 68.06 |
| GSMUA_Achr3P13390_001 | Banana | cytosol | 39.84 | 67.12 |
| Solyc12g010350.1.1 | Tomato | nucleus, unclear | 41.46 | 60.0 |
| CDY62505 | Canola | cytosol, plastid | 37.4 | 58.97 |
| VIT_11s0149g00240.t01 | Wine grape | cytosol | 37.4 | 58.97 |
| OQU75968 | Sorghum | cytosol | 42.28 | 31.9 |
Protein Annotations
| Gene3D:1.10.1620.10 | MapMan:17.1.2.1.42 | UniProt:A0A287VW81 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0019538 | EnsemblPlantsGene:HORVU7Hr1G029860 | EnsemblPlants:HORVU7Hr1G029860.1 | InterPro:IPR023626 | HAMAP:MF_00629 | PFAM:PD007914 |
| PFAM:PF00832 | ScanProsite:PS00051 | PANTHER:PTHR19970 | PANTHER:PTHR19970:SF13 | InterPro:Ribosomal_L39 | InterPro:Ribosomal_L39_CS |
| InterPro:Ribosomal_L39e_dom_sf | SUPFAM:SSF48662 | TMHMM:TMhelix | UniParc:UPI000B484092 | SEG:seg | : |
Description
No Description!
Coordinates
chrchr7H:-:56813646..56814417
Molecular Weight (calculated)
14033.1 Da
IEP (calculated)
12.518
GRAVY (calculated)
-0.668
Length
123 amino acids
Sequence
(BLAST)
(BLAST)
001: PTRSCPASRT NYFFPRTHQP VRPIPHCSPL YKPSRHPFPP PPIQGFPRAA AAAAAAFVSA AAAAAAFVSA ATMPSHKTFR IKQKLAKKQR QNRPIPYWIR
101: MRTDNTIRYN AKRRHWRRTK LGF
101: MRTDNTIRYN AKRRHWRRTK LGF
1: MPSHKSFMIK KKLGKKMRQN RPIPHWIRLR TDNTIRYNAK RRHWRRTKLG F
Arabidopsis Description
RPL39C60S ribosomal protein L39-1 [Source:UniProtKB/Swiss-Prot;Acc:P51424]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.