CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02690
KRH12415
KRH19202
KRH37411

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25210.1	KRH02690	AT4G26110.1	21798944
AT2G25210.1	KRH12415	AT4G26110.1	21798944
AT2G25210.1	KRH19202	AT4G26110.1	21798944
AT2G25210.1	KRH37411	AT4G26110.1	21798944
AT2G25210.1	KRH02690	AT5G56950.1	21798944
AT2G25210.1	KRH12415	AT5G56950.1	21798944
AT2G25210.1	KRH19202	AT5G56950.1	21798944
AT2G25210.1	KRH37411	AT5G56950.1	21798944
AT4G31985.1	KRH02690	AT4G26110.1	21798944
AT4G31985.1	KRH12415	AT4G26110.1	21798944
AT4G31985.1	KRH19202	AT4G26110.1	21798944
AT4G31985.1	KRH37411	AT4G26110.1	21798944
AT4G31985.1	KRH02690	AT5G56950.1	21798944
AT4G31985.1	KRH12415	AT5G56950.1	21798944
AT4G31985.1	KRH19202	AT5G56950.1	21798944
AT4G31985.1	KRH37411	AT5G56950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0796900-00	Rice	cytosol	90.91	100.0
Zm00001d018383_P002	Maize	cytosol	90.91	98.04
Os02t0797200-01	Rice	cytosol	90.91	98.04
Zm00001d045121_P001	Maize	cytosol	90.91	98.04
KRH61699	Soybean	cytosol	90.91	98.04
KRH52367	Soybean	cytosol	90.91	98.04
KRH37867	Soybean	cytosol	90.91	98.04
EES05958	Sorghum	cytosol	90.91	98.04
KRH12895	Soybean	cytosol	90.91	98.04
GSMUA_Achr1P15810_001	Banana	cytosol	61.82	97.14
Os06t0181566-01	Rice	plastid	89.09	96.08
PGSC0003DMT400003718	Potato	cytosol	87.27	94.12
TraesCS6A01G360400.1	Wheat	cytosol	87.27	94.12
TraesCS6B01G393300.1	Wheat	cytosol	87.27	94.12
TraesCS6D01G343900.1	Wheat	cytosol	87.27	94.12
TraesCS7A01G145700.1	Wheat	cytosol	87.27	94.12
TraesCS7D01G147000.1	Wheat	cytosol	87.27	94.12
Solyc07g005050.2.1	Tomato	cytosol	85.45	92.16
AT2G25210.1	Thale cress	cytosol	72.73	90.91
CDY43252	Canola	cytosol	56.36	88.57
Bra032033.1-P	Field mustard	cytosol	83.64	88.46
AT4G31985.1	Thale cress	cytosol	81.82	88.24
Bra039161.1-P	Field mustard	cytosol	80.0	86.27
AT3G02190.1	Thale cress	cytosol	78.18	84.31
Bra023970.1-P	Field mustard	cytosol	81.82	81.82
VIT_11s0149g00220.t01	Wine grape	mitochondrion	87.27	80.0
VIT_04s0008g06030.t01	Wine grape	cytosol	89.09	73.13
Zm00001d035838_P001	Maize	extracellular	92.73	70.83
Bra040064.1-P	Field mustard	cytosol	83.64	70.77
HORVU0Hr1G017360.1	Barley	mitochondrion	89.09	67.12
GSMUA_Achr3P13390_001	Banana	cytosol	89.09	67.12
VIT_11s0149g00240.t01	Wine grape	cytosol	85.45	60.26
CDY62505	Canola	cytosol, plastid	83.64	58.97
Solyc12g010350.1.1	Tomato	nucleus, unclear	85.45	55.29
GSMUA_Achr7P19310_001	Banana	cytosol	89.09	55.06
Zm00001d052025_P001	Maize	mitochondrion	92.73	52.58
HORVU7Hr1G029860.1	Barley	plastid	89.09	39.84
OQU75968	Sorghum	cytosol	90.91	30.67

Protein Annotations

Gene3D:1.10.1620.10	MapMan:17.1.2.1.42	EMBL:ACUP02003419	EnsemblPlantsGene:GLYMA_06G064200	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:IPR023626
UniProt:K7KTF3	EnsemblPlants:KRH52368	ProteinID:KRH52368	ProteinID:KRH52368.1	PFAM:PD007914	PFAM:PF00832
ScanProsite:PS00051	PANTHER:PTHR19970	PANTHER:PTHR19970:SF13	InterPro:Ribosomal_L39	InterPro:Ribosomal_L39_CS	InterPro:Ribosomal_L39e_dom_sf
SUPFAM:SSF48662	UniParc:UPI0002949214	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:4887324..4887928

Molecular Weight (calculated)

7038.9 Da

IEP (calculated)

12.530

GRAVY (calculated)

-1.247

Length

55 amino acids

Sequence
(BLAST)

1: MFFCKPSHKT FRIKKKLAKK MRQNRPIPYW IRMRTDNTIR YNAKRRHWRR TKLGF

Best Arabidopsis Sequence Match ( AT4G31985.1 )
(BLAST)

1: MPSHKSFMIK KKLGKKMRQN RPIPHWIRLR TDNTIRYNAK RRHWRRTKLG F

Arabidopsis Description

RPL39C60S ribosomal protein L39-1 [Source:UniProtKB/Swiss-Prot;Acc:P51424]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.