Factsheet for Zm00001d035838_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
mitochondrion 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0796900-00	Rice	cytosol	69.44	100.0
KRH52367	Soybean	cytosol	69.44	98.04
Os02t0797200-01	Rice	cytosol	69.44	98.04
Zm00001d045121_P001	Maize	cytosol	69.44	98.04
KRH37867	Soybean	cytosol	69.44	98.04
Zm00001d018383_P002	Maize	cytosol	69.44	98.04
KRH61699	Soybean	cytosol	69.44	98.04
KRH12895	Soybean	cytosol	69.44	98.04
GSMUA_Achr1P15810_001	Banana	cytosol	47.22	97.14
PGSC0003DMT400003718	Potato	cytosol	66.67	94.12
TraesCS6B01G393300.1	Wheat	cytosol	66.67	94.12
TraesCS6D01G343900.1	Wheat	cytosol	66.67	94.12
TraesCS7A01G145700.1	Wheat	cytosol	66.67	94.12
TraesCS7D01G147000.1	Wheat	cytosol	66.67	94.12
TraesCS6A01G360400.1	Wheat	cytosol	66.67	94.12
KRH52368	Soybean	cytosol	70.83	92.73
Solyc07g005050.2.1	Tomato	cytosol	65.28	92.16
AT2G25210.1	Thale cress	cytosol	55.56	90.91
Bra032033.1-P	Field mustard	cytosol	65.28	90.38
CDY43252	Canola	cytosol	43.06	88.57
AT4G31985.1	Thale cress	cytosol	62.5	88.24
Bra039161.1-P	Field mustard	cytosol	61.11	86.27
AT3G02190.1	Thale cress	cytosol	59.72	84.31
Bra023970.1-P	Field mustard	cytosol	63.89	83.64
VIT_11s0149g00220.t01	Wine grape	mitochondrion	66.67	80.0
VIT_04s0008g06030.t01	Wine grape	cytosol	66.67	71.64
Bra040064.1-P	Field mustard	cytosol	63.89	70.77
GSMUA_Achr3P13390_001	Banana	cytosol	69.44	68.49
HORVU0Hr1G017360.1	Barley	mitochondrion	66.67	65.75
VIT_11s0149g00240.t01	Wine grape	cytosol	68.06	62.82
CDY62505	Canola	cytosol, plastid	65.28	60.26
Solyc12g010350.1.1	Tomato	nucleus, unclear	65.28	55.29
Zm00001d052025_P001	Maize	mitochondrion	73.61	54.64
HORVU7Hr1G029860.1	Barley	plastid	68.06	39.84
OQU75968	Sorghum	cytosol	86.11	38.04

Protein Annotations

Gene3D:1.10.1620.10	MapMan:17.1.2.1.42	EntrezGene:542444	UniProt:A0A1D6LIY9	ProteinID:AQK79747.1	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR023626	PFAM:PD007914	PFAM:PF00832	ScanProsite:PS00051	PANTHER:PTHR19970
PANTHER:PTHR19970:SF13	InterPro:Ribosomal_L39	InterPro:Ribosomal_L39_CS	InterPro:Ribosomal_L39e_dom_sf	SUPFAM:SSF48662	SignalP:SignalP-noTM
UniParc:UPI000842B9DB	EnsemblPlantsGene:Zm00001d035838	EnsemblPlants:Zm00001d035838_P001	EnsemblPlants:Zm00001d035838_T001	:	:

Description

60S ribosomal protein L39-1

Coordinates

chr6:+:54311637..54312577

Molecular Weight (calculated)

8873.2 Da

IEP (calculated)

12.523

GRAVY (calculated)

-0.704

Length

72 amino acids

Sequence
(BLAST)

1: MSWSFALILR FCPVALRCVP AQPSHKTFRI KKKLAKKMRQ NRPIPYWIRM RTDNTIRYNA KRRHWRRTKL GF

Best Arabidopsis Sequence Match ( AT4G31985.1 )
(BLAST)

1: MPSHKSFMIK KKLGKKMRQN RPIPHWIRLR TDNTIRYNAK RRHWRRTKLG F

Arabidopsis Description

RPL39C60S ribosomal protein L39-1 [Source:UniProtKB/Swiss-Prot;Acc:P51424]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.