Factsheet for GSMUA_Achr1P15810_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43252	Canola	cytosol	88.57	88.57
AT2G25210.1	Thale cress	cytosol	97.14	77.27
Os02t0796900-00	Rice	cytosol	97.14	68.0
Zm00001d018383_P002	Maize	cytosol	97.14	66.67
Os06t0181566-01	Rice	plastid	97.14	66.67
Os02t0797200-01	Rice	cytosol	97.14	66.67
Zm00001d045121_P001	Maize	cytosol	97.14	66.67
KRH61699	Soybean	cytosol	97.14	66.67
KRH52367	Soybean	cytosol	97.14	66.67
KRH37867	Soybean	cytosol	97.14	66.67
KRH12895	Soybean	cytosol	97.14	66.67
EES05958	Sorghum	cytosol	97.14	66.67
AT4G31985.1	Thale cress	cytosol	97.14	66.67
Bra032033.1-P	Field mustard	cytosol	97.14	65.38
Solyc07g005050.2.1	Tomato	cytosol	94.29	64.71
PGSC0003DMT400003718	Potato	cytosol	94.29	64.71
TraesCS6A01G360400.1	Wheat	cytosol	94.29	64.71
TraesCS6B01G393300.1	Wheat	cytosol	94.29	64.71
TraesCS6D01G343900.1	Wheat	cytosol	94.29	64.71
TraesCS7A01G145700.1	Wheat	cytosol	94.29	64.71
TraesCS7D01G147000.1	Wheat	cytosol	94.29	64.71
KRH52368	Soybean	cytosol	97.14	61.82
AT3G02190.1	Thale cress	cytosol	88.57	60.78
Bra039161.1-P	Field mustard	cytosol	88.57	60.78
Bra023970.1-P	Field mustard	cytosol	94.29	60.0
VIT_11s0149g00220.t01	Wine grape	mitochondrion	100.0	58.33
Bra040064.1-P	Field mustard	cytosol	97.14	52.31
VIT_04s0008g06030.t01	Wine grape	cytosol	100.0	52.24
GSMUA_Achr3P13390_001	Banana	cytosol	100.0	47.95
Zm00001d035838_P001	Maize	extracellular	97.14	47.22
HORVU0Hr1G017360.1	Barley	mitochondrion	94.29	45.21
CDY62505	Canola	cytosol, plastid	97.14	43.59
VIT_11s0149g00240.t01	Wine grape	cytosol	97.14	43.59
GSMUA_Achr7P19310_001	Banana	cytosol	100.0	39.33
Solyc12g010350.1.1	Tomato	nucleus, unclear	94.29	38.82
Zm00001d052025_P001	Maize	mitochondrion	97.14	35.05
HORVU7Hr1G029860.1	Barley	plastid	94.29	26.83
OQU75968	Sorghum	cytosol	97.14	20.86

Protein Annotations

Gene3D:1.10.1620.10	MapMan:17.1.2.1.42	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr1G15810_001	EnsemblPlants:GSMUA_Achr1P15810_001
EnsemblPlants:GSMUA_Achr1T15810_001	InterPro:IPR023626	UniProt:M0S089	PFAM:PD007914	PFAM:PF00832	ScanProsite:PS00051
PANTHER:PTHR19970	PANTHER:PTHR19970:SF13	InterPro:Ribosomal_L39	InterPro:Ribosomal_L39_CS	InterPro:Ribosomal_L39e_dom_sf	SUPFAM:SSF48662
UniParc:UPI0002964F88	:	:	:	:	:

Description

60S ribosomal protein L39-1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G15810_001]

Coordinates

chr1:-:11849231..11849901

Molecular Weight (calculated)

4563.6 Da

IEP (calculated)

12.806

GRAVY (calculated)

-1.580

Length

35 amino acids

Sequence
(BLAST)

1: MRQNRPIPHW IRMRTDNTIR YNAKRRHWRR TKLGF

Best Arabidopsis Sequence Match ( AT4G31985.1 )
(BLAST)

1: MPSHKSFMIK KKLGKKMRQN RPIPHWIRLR TDNTIRYNAK RRHWRRTKLG F

Arabidopsis Description

RPL39C60S ribosomal protein L39-1 [Source:UniProtKB/Swiss-Prot;Acc:P51424]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.