Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
mitochondrion:
27297264
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH37867 | Soybean | cytosol | 52.58 | 100.0 |
| Zm00001d045121_P001 | Maize | cytosol | 52.58 | 100.0 |
| Zm00001d018383_P002 | Maize | cytosol | 52.58 | 100.0 |
| KRH61699 | Soybean | cytosol | 52.58 | 100.0 |
| KRH52367 | Soybean | cytosol | 52.58 | 100.0 |
| KRH12895 | Soybean | cytosol | 52.58 | 100.0 |
| EES05958 | Sorghum | cytosol | 52.58 | 100.0 |
| Os06t0181566-01 | Rice | plastid | 51.55 | 98.04 |
| GSMUA_Achr1P15810_001 | Banana | cytosol | 35.05 | 97.14 |
| PGSC0003DMT400003718 | Potato | cytosol | 50.52 | 96.08 |
| Solyc07g005050.2.1 | Tomato | cytosol | 49.48 | 94.12 |
| KRH52368 | Soybean | cytosol | 52.58 | 92.73 |
| AT2G25210.1 | Thale cress | cytosol | 41.24 | 90.91 |
| AT4G31985.1 | Thale cress | cytosol | 47.42 | 90.2 |
| CDY43252 | Canola | cytosol | 31.96 | 88.57 |
| Bra032033.1-P | Field mustard | cytosol | 47.42 | 88.46 |
| Bra039161.1-P | Field mustard | cytosol | 46.39 | 88.24 |
| AT3G02190.1 | Thale cress | cytosol | 45.36 | 86.27 |
| VIT_11s0149g00220.t01 | Wine grape | mitochondrion | 51.55 | 83.33 |
| Bra023970.1-P | Field mustard | cytosol | 46.39 | 81.82 |
| GSMUA_Achr3P13390_001 | Banana | cytosol | 55.67 | 73.97 |
| Zm00001d035838_P001 | Maize | extracellular | 54.64 | 73.61 |
| Bra040064.1-P | Field mustard | cytosol | 48.45 | 72.31 |
| VIT_04s0008g06030.t01 | Wine grape | cytosol | 49.48 | 71.64 |
| VIT_11s0149g00240.t01 | Wine grape | cytosol | 52.58 | 65.38 |
| Solyc12g010350.1.1 | Tomato | nucleus, unclear | 54.64 | 62.35 |
| CDY62505 | Canola | cytosol, plastid | 49.48 | 61.54 |
Protein Annotations
| Gene3D:1.10.1620.10 | EntrezGene:103654171 | MapMan:17.1.2.1.42 | UniProt:A0A1D6QC37 | ProteinID:AQK55802.1 | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | InterPro:IPR023626 | HAMAP:MF_00629 | PFAM:PD007914 | PFAM:PF00832 | ScanProsite:PS00051 |
| PANTHER:PTHR19970 | PANTHER:PTHR19970:SF13 | InterPro:Ribosomal_L39 | InterPro:Ribosomal_L39_CS | InterPro:Ribosomal_L39e_dom_sf | SUPFAM:SSF48662 |
| UniParc:UPI0004DEC3FE | EnsemblPlantsGene:Zm00001d052025 | EnsemblPlants:Zm00001d052025_P001 | EnsemblPlants:Zm00001d052025_T001 | SEG:seg | : |
Description
60S ribosomal protein L39
Coordinates
chr4:-:176831275..176832132
Molecular Weight (calculated)
11935.9 Da
IEP (calculated)
12.744
GRAVY (calculated)
-0.975
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MRQACPTQTP RLSLPLYNPH YPPFHAFRLL GFSRRRRRRF VVSAAAMPSH KTFRIKKKLA KKMRQNRPIP YWIRMRTDNT IRYNAKRRHW RRTKLGF
1: MPSHKSFMIK KKLGKKMRQN RPIPHWIRLR TDNTIRYNAK RRHWRRTKLG F
Arabidopsis Description
RPL39C60S ribosomal protein L39-1 [Source:UniProtKB/Swiss-Prot;Acc:P51424]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.